Setup guide for ATLAS

Manu_Roma · October 30, 2024, 10:53am

Hello everyone,

I’m new to using OHDSI and I am trying to install the WebAPI to set up ATLAS. I’m doing this on a Linux-based server, but I’m facing some problems following the WebAPI Installation Guide.

After creating the settings.xml file, I tried to run the following command:
mvn clean package -DskipUnitTests -DskipITtests -s WebAPIConfig/settings.xml -P webapi-postgresql

However, after running for a long time, I received a lot of errors, including:
[ERROR] Non-resolvable import POM: Could not transfer artifact org.springframework.boot:spring-boot-dependencies:pom:1.5.22.RELEASE …
[ERROR] ‘dependencies.dependency.version’ for org.springframework.boot:spring-boot-starter:jar is missing.
…

It appears there are issues with downloading dependencies, specifically related to the OHDSI repository.

Does anyone know how to resolve this error?

For more information on installation, you can refer to the WebAPI Installation Guide:

Thanks,
Manuel

Chris_Knoll · October 30, 2024, 12:32pm

Do you see any errors in the log? If it ran for a long time, it sounds like it might be trying to download dependencies from the web (from OHDSI maven repository) and if that failed it might result in the error you see.

Do you see anything like connection failures or timeouts?

Manu_Roma · October 31, 2024, 8:01am

this is the entire error:

Manu_Roma · October 31, 2024, 8:56am

As far as i understood all the error refer to some depencies in this file: https://repo.ohdsi.org/nexus/content/groups/public/org/springframework/boot/spring-boot-dependencies/1.5.22.RELEASE/spring-boot-dependencies-1.5.22.RELEASE.pom

and are errors similar to this:

Chris_Knoll · October 31, 2024, 3:57pm

In your first message it shows a ‘connection timed out’ so there seems to be some network block between your host and the server repo.ohdsi.org.

Manu_Roma · November 19, 2024, 2:19pm

yeah, its was a problerm reguarding my proxy, i have resolved it but im still trying to make the web api works, because the build is ok, so now mvn clean package -DskipUnitTests -DskipITtests -s WebAPIConfig/settings.xml -P webapi-postgresql works
i still get problems to makethe webapi works, after having deployed it in tomcat it gives me this error: