OHDSI Home | Forums | Wiki | Github

Problem with BiocManager::install("org.Sc.sgd.db")

I got the following message when I try to install org.Sc.sgd.db in Rstudio.

Bioconductor version 3.11 (BiocManager 1.30.10), R 4.0.2 (2020-06-22)
Installing package(s) ‘org.Sc.sgd.db’
installing the source package ‘org.Sc.sgd.db’

probando la URL ‘https://bioconductor.org/packages/3.11/data/annotation/src/contrib/org.Sc.sgd.db_3.11.4.tar.gz
Content type ‘application/x-gzip’ length 19908691 bytes (19.0 MB)
downloaded 19.0 MB

  • installing source package ‘org.Sc.sgd.db’ …
    ** using staged installation
    ** R
    ** inst
    ** byte-compile and prepare package for lazy loading
    ** help
    *** installing help indices
    converting help for package ‘org.Sc.sgd.db’
    finding HTML links … done
    org.Sc.sgdALIAS html
    org.Sc.sgdBASE html
    org.Sc.sgdCHR html
    org.Sc.sgdCHRLENGTHS html
    org.Sc.sgdCHRLOC html
    org.Sc.sgdCOMMON2ORF html
    org.Sc.sgdDESCRIPTION html
    org.Sc.sgdENSEMBL html
    org.Sc.sgdENSEMBLPROT html
    org.Sc.sgdENSEMBLTRANS html
    org.Sc.sgdENTREZID html
    org.Sc.sgdENZYME html
    org.Sc.sgdGENENAME html
    org.Sc.sgdGO html
    org.Sc.sgdGO2ALLORFS html
    org.Sc.sgdINTERPRO html
    org.Sc.sgdMAPCOUNTS html
    org.Sc.sgdORGANISM html
    org.Sc.sgdPATH html
    org.Sc.sgdPMID html
    org.Sc.sgdREFSEQ html
    org.Sc.sgdREJECTORF html
    org.Sc.sgdSGD html
    org.Sc.sgdSMART html
    org.Sc.sgdUNIPROT html
    org.Sc.sgd_dbconn html
    ** building package indices
    ** testing if installed package can be loaded from temporary location
    Error: package or namespace load failed for ‘org.Sc.sgd.db’:
    .onLoad failed in loadNamespace() for ‘org.Sc.sgd.db’, details:
    call: NULL
    error: Failed to load extension: No se puede encontrar el módulo especificado.

Error: loading failed
Ejecución interrumpida
ERROR: loading failed

  • removing ‘C:/Users/Jesús/Documents/R/win-library/4.0/org.Sc.sgd.db’

The downloaded source packages are in
Old packages: ‘igraph’, ‘xfun’
Update all/some/none? [a/s/n]:
Warning message:
In install.packages(…) :
installation of package ‘org.Sc.sgd.db’ had non-zero exit status

How can I solve this problem?
Thanks everybody

Hey Morales, did you solve the problem? I am having the same issue here…