After that we deployed the .war file that was built into Apache Tomcat webapps folder but it failed to start:
Have attached the error messages from the Tomcat log below and hope that someone can advise us on how to go about resolving this
java.lang.IllegalStateException: Error starting child
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:716)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:695)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:978)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1850)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:118)
at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:773)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:427)
at org.apache.catalina.startup.HostConfig.check(HostConfig.java:1621)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:305)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
at org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1144)
at org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1346)
at org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1350)
at org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1328)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.runAndReset(FutureTask.java:305)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:305)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/WebAPI]]
at org.apache.catalina.util.LifecycleBase.handleSubClassException(LifecycleBase.java:441)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:198)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:713)
… 24 more
Caused by: org.springframework.context.ApplicationContextException: Unable to start embedded container; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration’: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$$EnhancerBySpringCGLIB$$6db1a2ae]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘resourceConfigCustomizer’ defined in class path resource [org/springframework/boot/autoconfigure/jersey/JerseyAutoConfiguration
This must be caused by something else, earlier in your logs. Can you clear your logs and restart the process so that you can get a fresh log. Then attach the log here (please clean out any sensitive information).
Was Webapi.war build successful?
Did you try localhost:8080/WebAPI.source/sources in browser?
Have you configured source and source_daimon tables in webapi schema properly?
Yes, Webapi.war build was successful. We tried to deploy it once, it worked and the tables were created in the webapi schema
Subsequently after inserting the configuration values into the source and source daimon tables, we stopped webapi and was not able to start it again.
Please find results below:
tomcat logs after clearing and running again
:: Spring Boot :: (v1.5.2.RELEASE)
2019-03-31 05:22:37.117 INFO http-nio-8080-exec-3 org.ohdsi.webapi.WebApi - - Starting WebApi on .local with (******/WebAPI/WEB-INF/classes started by **************** in ********************)
2019-03-31 05:22:37.119 INFO http-nio-8080-exec-3 org.ohdsi.webapi.WebApi - - The following profiles are active: default
2019-03-31 05:22:37.166 INFO http-nio-8080-exec-3 org.springframework.boot.context.embedded.AnnotationConfigEmbeddedWebApplicationContext - - Refreshing org.springframework.boot.context.embedded.AnnotationConfigEmbeddedWebApplicationContext@ff478da: startup date [******]; root of context hierarchy
2019-03-31 05:22:37.326 INFO background-preinit org.hibernate.validator.internal.util.Version - - HV000001: Hibernate Validator 5.3.4.Final
2019-03-31 05:22:41.287 INFO http-nio-8080-exec-3 org.springframework.beans.factory.support.DefaultListableBeanFactory - - Overriding bean definition for bean ‘jobBuilders’ with a different definition: replacing [Root bean: class [null]; scope=; abstract=false; lazyInit=false; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=org.springframework.batch.core.configuration.annotation.SimpleBatchConfiguration; factoryMethodName=jobBuilders; initMethodName=null; destroyMethodName=(inferred); defined in class path resource [org/springframework/batch/core/configuration/annotation/SimpleBatchConfiguration.class]] with [Root bean: class [null]; scope=; abstract=false; lazyInit=false; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=true; factoryBeanName=jobConfig; factoryMethodName=jobBuilders; initMethodName=null; destroyMethodName=(inferred); defined in class path resource [org/ohdsi/webapi/JobConfig.class]]
2019-03-31 05:22:41.591 INFO http-nio-8080-exec-3 org.springframework.beans.factory.support.DefaultListableBeanFactory - - Overriding bean definition for bean ‘requestContextFilter’ with a different definition: replacing [Root bean: class [null]; scope=; abstract=false; lazyInit=false; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration; factoryMethodName=requestContextFilter; initMethodName=null; destroyMethodName=(inferred); defined in class path resource [org/springframework/boot/autoconfigure/jersey/JerseyAutoConfiguration.class]] with [Root bean: class [org.springframework.boot.autoconfigure.web.WebMvcAutoConfiguration$WebMvcAutoConfigurationAdapter]; scope=; abstract=false; lazyInit=false; autowireMode=3; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=requestContextFilter; initMethodName=null; destroyMethodName=(inferred); defined in class path resource [org/springframework/boot/autoconfigure/web/WebMvcAutoConfiguration$WebMvcAutoConfigurationAdapter.class]]
2019-03-31 05:22:42.065 INFO http-nio-8080-exec-3 org.springframework.integration.config.IntegrationRegistrar - - No bean named ‘integrationHeaderChannelRegistry’ has been explicitly defined. Therefore, a default DefaultHeaderChannelRegistry will be created.
2019-03-31 05:22:42.657 WARN http-nio-8080-exec-3 org.springframework.context.annotation.ConfigurationClassEnhancer - - @Bean method ScopeConfiguration.stepScope is non-static and returns an object assignable to Spring’s BeanFactoryPostProcessor interface. This will result in a failure to process annotations such as @Autowired, @Resource and @PostConstruct within the method’s declaring @Configuration class. Add the ‘static’ modifier to this method to avoid these container lifecycle issues; see @Bean javadoc for complete details.
2019-03-31 05:22:42.685 WARN http-nio-8080-exec-3 org.springframework.context.annotation.ConfigurationClassEnhancer - - @Bean method ScopeConfiguration.jobScope is non-static and returns an object assignable to Spring’s BeanFactoryPostProcessor interface. This will result in a failure to process annotations such as @Autowired, @Resource and @PostConstruct within the method’s declaring @Configuration class. Add the ‘static’ modifier to this method to avoid these container lifecycle issues; see @Bean javadoc for complete details.
2019-03-31 05:22:42.722 INFO http-nio-8080-exec-3 org.springframework.integration.config.DefaultConfiguringBeanFactoryPostProcessor - - No bean named ‘errorChannel’ has been explicitly defined. Therefore, a default PublishSubscribeChannel will be created.
2019-03-31 05:22:42.742 INFO http-nio-8080-exec-3 org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor - - JSR-330 ‘javax.inject.Inject’ annotation found and supported for autowiring
2019-03-31 05:22:42.827 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘converterConfiguration’ of type [org.ohdsi.webapi.ConverterConfiguration$$EnhancerBySpringCGLIB$$ffd7e27a] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:42.838 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘conversionService’ of type [org.springframework.core.convert.support.DefaultConversionService] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:43.260 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘org.springframework.transaction.annotation.ProxyTransactionManagementConfiguration’ of type [org.springframework.transaction.annotation.ProxyTransactionManagementConfiguration$$EnhancerBySpringCGLIB$$993cbb2e] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:43.361 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘shiroConfiguration’ of type [org.ohdsi.webapi.ShiroConfiguration$$EnhancerBySpringCGLIB$$ddab2129] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:43.375 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘flywayConfig’ of type [org.ohdsi.webapi.FlywayConfig$$EnhancerBySpringCGLIB$$9be06d82] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:44.765 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘secondaryDataSource’ of type [org.apache.tomcat.jdbc.pool.DataSource] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:44.778 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘org.springframework.boot.autoconfigure.jdbc.DataSourceAutoConfiguration’ of type [org.springframework.boot.autoconfigure.jdbc.DataSourceAutoConfiguration$$EnhancerBySpringCGLIB$$7b305e8e] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:44.983 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘spring.datasource-org.springframework.boot.autoconfigure.jdbc.DataSourceProperties’ of type [org.springframework.boot.autoconfigure.jdbc.DataSourceProperties] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:44.997 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘dataSourceInitializer’ of type [org.springframework.boot.autoconfigure.jdbc.DataSourceInitializer] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:45.160 INFO http-nio-8080-exec-3 org.flywaydb.core.internal.util.VersionPrinter - - Flyway 4.2.0 by Boxfuse
2019-03-31 05:22:45.351 INFO http-nio-8080-exec-3 org.flywaydb.core.internal.dbsupport.DbSupportFactory - - Database: jdbc:postgresql://localhost:5432/OHDSI (PostgreSQL 11.2)
2019-03-31 05:22:45.580 INFO http-nio-8080-exec-3 org.flywaydb.core.internal.command.DbMigrate - - Current version of schema “webapi”: 2.7.0.20190314171003
2019-03-31 05:22:45.580 WARN http-nio-8080-exec-3 org.flywaydb.core.internal.command.DbMigrate - - outOfOrder mode is active. Migration of schema “webapi” may not be reproducible.
2019-03-31 05:22:45.581 INFO http-nio-8080-exec-3 org.flywaydb.core.internal.command.DbMigrate - - Schema “webapi” is up to date. No migration necessary.
2019-03-31 05:22:45.584 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘flyway’ of type [org.flywaydb.core.Flyway] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:45.593 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘disabledSecurity’ of type [org.ohdsi.webapi.shiro.management.DisabledSecurity] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:45.610 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘noLockoutPolicy’ of type [org.ohdsi.webapi.shiro.lockout.NoLockoutPolicy] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:45.677 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘securityManager’ of type [org.ohdsi.webapi.shiro.lockout.LockoutWebSecurityManager] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:45.738 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘integrationGlobalProperties’ of type [org.springframework.beans.factory.config.PropertiesFactoryBean] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:45.739 INFO http-nio-8080-exec-3 org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker - - Bean ‘integrationGlobalProperties’ of type [java.util.Properties] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2019-03-31 05:22:45.792 INFO http-nio-8080-exec-3 org.springframework.web.context.ContextLoader - - Root WebApplicationContext: initialization completed in 8626 ms
2019-03-31 05:22:46.332 WARN http-nio-8080-exec-3 org.springframework.boot.context.embedded.AnnotationConfigEmbeddedWebApplicationContext - - Exception encountered during context initialization - cancelling refresh attempt: org.springframework.context.ApplicationContextException: Unable to start embedded container; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration’: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$$EnhancerBySpringCGLIB$$eab9a918]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘resourceConfigCustomizer’ defined in class path resource [org/springframework/boot/autoconfigure/jersey/JerseyAutoConfiguration$JacksonResourceConfigCustomizer.class]: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.ResourceConfigCustomizer]: Factory method ‘resourceConfigCustomizer’ threw exception; nested exception is java.lang.NoClassDefFoundError: javax/xml/bind/annotation/XmlElement
2019-03-31 05:22:46.344 ERROR http-nio-8080-exec-3 org.springframework.boot.SpringApplication - - Application startup failed
org.springframework.context.ApplicationContextException: Unable to start embedded container; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration’: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$$EnhancerBySpringCGLIB$$eab9a918]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘resourceConfigCustomizer’ defined in class path resource [org/springframework/boot/autoconfigure/jersey/JerseyAutoConfiguration$JacksonResourceConfigCustomizer.class]: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.ResourceConfigCustomizer]: Factory method ‘resourceConfigCustomizer’ threw exception; nested exception is java.lang.NoClassDefFoundError: javax/xml/bind/annotation/XmlElement
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.onRefresh(EmbeddedWebApplicationContext.java:137)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:536)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.refresh(EmbeddedWebApplicationContext.java:122)
at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:737)
at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:370)
at org.springframework.boot.SpringApplication.run(SpringApplication.java:314)
at org.springframework.boot.web.support.SpringBootServletInitializer.run(SpringBootServletInitializer.java:151)
at org.springframework.boot.web.support.SpringBootServletInitializer.createRootApplicationContext(SpringBootServletInitializer.java:131)
at org.springframework.boot.web.support.SpringBootServletInitializer.onStartup(SpringBootServletInitializer.java:86)
at org.springframework.web.SpringServletContainerInitializer.onStartup(SpringServletContainerInitializer.java:169)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5125)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.manager.ManagerServlet.start(ManagerServlet.java:1409)
at org.apache.catalina.manager.HTMLManagerServlet.start(HTMLManagerServlet.java:698)
at org.apache.catalina.manager.HTMLManagerServlet.doPost(HTMLManagerServlet.java:223)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:660)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:741)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.catalina.filters.CsrfPreventionFilter.doFilter(CsrfPreventionFilter.java:136)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:200)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:607)
at org.apache.catalina.valves.RequestFilterValve.process(RequestFilterValve.java:348)
at org.apache.catalina.valves.RemoteAddrValve.invoke(RemoteAddrValve.java:53)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:668)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343)
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:408)
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:834)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1415)
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration’: Bean instantiation via constructor failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$$EnhancerBySpringCGLIB$$eab9a918]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘resourceConfigCustomizer’ defined in class path resource [org/springframework/boot/autoconfigure/jersey/JerseyAutoConfiguration$JacksonResourceConfigCustomizer.class]: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.ResourceConfigCustomizer]: Factory method ‘resourceConfigCustomizer’ threw exception; nested exception is java.lang.NoClassDefFoundError: javax/xml/bind/annotation/XmlElement
at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:279)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1193)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1095)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:513)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:372)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1173)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1067)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:513)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.boot.web.servlet.ServletContextInitializerBeans.getOrderedBeansOfType(ServletContextInitializerBeans.java:234)
at org.springframework.boot.web.servlet.ServletContextInitializerBeans.getOrderedBeansOfType(ServletContextInitializerBeans.java:215)
at org.springframework.boot.web.servlet.ServletContextInitializerBeans.addServletContextInitializerBeans(ServletContextInitializerBeans.java:91)
at org.springframework.boot.web.servlet.ServletContextInitializerBeans.(ServletContextInitializerBeans.java:79)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.getServletContextInitializerBeans(EmbeddedWebApplicationContext.java:241)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.selfInitialize(EmbeddedWebApplicationContext.java:228)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.access$000(EmbeddedWebApplicationContext.java:89)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext$1.onStartup(EmbeddedWebApplicationContext.java:213)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.createEmbeddedServletContainer(EmbeddedWebApplicationContext.java:168)
at org.springframework.boot.context.embedded.EmbeddedWebApplicationContext.onRefresh(EmbeddedWebApplicationContext.java:134)
… 43 more
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$$EnhancerBySpringCGLIB$$eab9a918]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘resourceConfigCustomizer’ defined in class path resource [org/springframework/boot/autoconfigure/jersey/JerseyAutoConfiguration$JacksonResourceConfigCustomizer.class]: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.ResourceConfigCustomizer]: Factory method ‘resourceConfigCustomizer’ threw exception; nested exception is java.lang.NoClassDefFoundError: javax/xml/bind/annotation/XmlElement
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:154)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:122)
at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:271)
… 70 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘resourceConfigCustomizer’ defined in class path resource [org/springframework/boot/autoconfigure/jersey/JerseyAutoConfiguration$JacksonResourceConfigCustomizer.class]: Bean instantiation via factory method failed; nested exception is org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.ResourceConfigCustomizer]: Factory method ‘resourceConfigCustomizer’ threw exception; nested exception is java.lang.NoClassDefFoundError: javax/xml/bind/annotation/XmlElement
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:599)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1173)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1067)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:513)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:483)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:306)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:302)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:202)
at org.springframework.beans.factory.config.DependencyDescriptor.resolveCandidate(DependencyDescriptor.java:208)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.addCandidateEntry(DefaultListableBeanFactory.java:1309)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.findAutowireCandidates(DefaultListableBeanFactory.java:1275)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveMultipleBeans(DefaultListableBeanFactory.java:1180)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:1096)
at org.springframework.beans.factory.support.DefaultListableBeanFactory$DependencyObjectProvider.getIfAvailable(DefaultListableBeanFactory.java:1655)
at org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration.(JerseyAutoConfiguration.java:106)
at org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$$EnhancerBySpringCGLIB$$eab9a918.()
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:142)
… 72 more
Caused by: org.springframework.beans.BeanInstantiationException: Failed to instantiate [org.springframework.boot.autoconfigure.jersey.ResourceConfigCustomizer]: Factory method ‘resourceConfigCustomizer’ threw exception; nested exception is java.lang.NoClassDefFoundError: javax/xml/bind/annotation/XmlElement
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:189)
at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:588)
… 93 more
Caused by: java.lang.NoClassDefFoundError: javax/xml/bind/annotation/XmlElement
at com.fasterxml.jackson.module.jaxb.JaxbAnnotationIntrospector.(JaxbAnnotationIntrospector.java:139)
at com.fasterxml.jackson.module.jaxb.JaxbAnnotationIntrospector.(JaxbAnnotationIntrospector.java:126)
at org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$JacksonResourceConfigCustomizer$ObjectMapperCustomizer.addJaxbAnnotationIntrospector(JerseyAutoConfiguration.java:266)
at org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$JacksonResourceConfigCustomizer$ObjectMapperCustomizer.access$200(JerseyAutoConfiguration.java:262)
at org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$JacksonResourceConfigCustomizer.addJaxbAnnotationIntrospectorIfPresent(JerseyAutoConfiguration.java:258)
at org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$JacksonResourceConfigCustomizer.resourceConfigCustomizer(JerseyAutoConfiguration.java:244)
at org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$JacksonResourceConfigCustomizer$$EnhancerBySpringCGLIB$$1e542a26.CGLIB$resourceConfigCustomizer$0()
at org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$JacksonResourceConfigCustomizer$$EnhancerBySpringCGLIB$$1e542a26$$FastClassBySpringCGLIB$$731c85cc.invoke()
at org.springframework.cglib.proxy.MethodProxy.invokeSuper(MethodProxy.java:228)
at org.springframework.context.annotation.ConfigurationClassEnhancer$BeanMethodInterceptor.intercept(ConfigurationClassEnhancer.java:358)
at org.springframework.boot.autoconfigure.jersey.JerseyAutoConfiguration$JacksonResourceConfigCustomizer$$EnhancerBySpringCGLIB$$1e542a26.resourceConfigCustomizer()
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:566)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:162)
… 94 more
Caused by: java.lang.ClassNotFoundException: javax.xml.bind.annotation.XmlElement
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1363)
at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1186)
… 110 more
What is extremely odd is that you say that you were able to start it once and get tables created, and then after inserting source records, you get this error. They can’t be connected, since at the point of your error, the server failed to even start. But, to be sure, you can always delete the records from your source table and restart it (I don’t think that will change anything).
The real question is: why isn’t the java runtime finding javax.xml.bind.annotation.XmlElement class? I’m not sure if that’s a core class of the JDK or some extension. But if you can think of anything that might have changed between running and breaking (such as new version of JDK, you changed class paths, etc), that might help us understand what went wrong.
I believe this would be put in your ‘startup options’ for your Tomcat instance. I don’t know how to specify those options off the top of my head right now, it depends if you’re running on Windows vs. Linux.
Odd, from the last comment about the JAVA_HOME, looks like you are on JDK 8. But can you confirm that? I don’t know if you were just citing documentation with the JDK 8 reference or if that is your actual run-time environment.
I will experiment about changing our core maven dependencies to include the JAXB library, which should resolve your issue, but otherwise, I’m not sure what specifically is going on in your environment. If you do find something, please let us know so we can help people with this same issue in the future.
Apologies for the late reply, but yes, now the error is not showing anymore after we removed the jdk 11. Instead there is another error message:
SEVERE [main] org.apache.catalina.startup.HostConfig.deployWAR Error deploying web application archive [/Library/Tomcat/webapps/WebAPI.war]
java.lang.IllegalStateException: Error starting child
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'jobInvalidator': Invocation of init method failed; nested exception is org.springframework.transaction.CannotCreateTransactionException: Could not open JPA EntityManager for transaction; nested exception is org.hibernate.exception.GenericJDBCException: Unable to acquire JDBC Connection
I believe it is unrelated to the earlier error. We’ll figure it out in time to come but hope the update on the jdk helps other users for now.
This points to either a JDBC url problem. Check your settings and look in the log earlier, it may have a more detailed reason for ‘Unable to acquire JDBC Connection’.
