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OHDSI Community Call 28Jun2016 - CANCELLED

General
#1

Hi All,

We have no presentations or topics of dicusssion for Tuesday’s call so I’ve decided to cancel the meeting.

IMPORTANT: We’re looking for presentations for upcoming OHDSI calls. If you would like to present, or lead a discussion at an upcoming meeting, please let me know by replying to this thread.

UPCOMING COLLABORATION OPPORTUNITIES

Grant Deadlines
NIH Collaborating Centers of Excellence in Regulatory Science and Innovation (U01)
https://grants.nih.gov/grants/guide/rfa-files/RFA-FD-16-036.html
Application Deadline - June 28th

NSF EPSCoR Research Infrastructure Improvement Program Track-1: (RII Track-1)
http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503429&org=NSF&sel_org=CISE&from=fund
Letter of Intent Deadline - July 5th
Full Proposal Deadline - August 2nd

Conferences Deadlines
International Semantic Web Conference - October 17-21 in Kobe, Japan

Submission Deadline - July 7th

Upcoming Conferences
IMIA International Congress on Nursing Informatics - June 25-29th in Geneva, Switzerland
http://ni2016.org/submission/

DIA 2016 Annual Meeting - June 26-30th in Philadelphia PA
http://www2.diaglobal.org/en-US/Flagship-Meetings/DIA2016.aspx

#2

Hi Maura,

We just committed to GitHub the full implementation of the ETL-CMS project which provides code to produce a public synthetic OMOP CDMv5 dataset of 2.33M patients based on the CMS DE-SynPUF data. We also intend to upload this data in a suitable repository. People have been wanting a dataset of this type for a long time. It should serve as a testbed for methods, can be used for the OHDSI 2016 Symposium tutorials, and enable people to run the OHDSI tools without needing to have their own individual-level patient record data. I’d be happy to present something about this in a forthcoming meeting.

Christophe

#3

@Christophe_Lambert:

How big is the dataset? I am preparing ftp.ohdsi.org for these purposes.

#4

It is a set of .csv files totaling 100GB uncompressed that I’m guessing compresses down to about 20-30GB.

#5

Where can I pick it up?

#6

Next week I’d like to upload. Is there space on ftp.ohdsi.org? The plan is to prepare a complete set (about 2.33M patients) as well as a 5% subset of the first 1/20th of the data, and then a set of about 10k patients.

#7

Yes. But the Domain record isn’t set yet, so you cannot see it right now. Also, you have no upload rights. I’ll give you my credentials. Anonymous can only download.

t