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Newly added standardized vocabularies

(Michael Kallfelz) #1

This week we released two new vocabularies to Athena:

CIM10 - The French version of the ICD10 classification, at this point created from the 2020 version and presumably lacking some historic, now deprecated, entries.
Release Notes

NCCD - The Normalized Chinese Clinical Drug knowledge base
Release Notes

(Michael Kallfelz) #2

This week we released a couple new vocabularies to Athena:
ICD10GM - The German version of the ICD10 classification. It has been created using stacked versions of the ICD10 catalogs provided by Dresden University. Codes that were not present in the ICD10 International version have been auto-translated and uphill mapping applied to less specific parent codes. This delta list of codes is preserved for a later follow up to apply more specific mappings.
Release Notes

A first version of a set of Cancer and Gene variant vocabularies that at this point are focused to support cancer classification use cases and are not entirely complete. These vocabularies will receive ongoing updates over the course of the following months.

Name Description
CIViC Clinical Interpretation of Variants in Cancer (civicdb.org)
CGI Cancer Genome Interpreter (Pompeu Fabra University)
ClinVar ClinVar (NCBI)
JAX The Clinical Knowledgebase (The Jackson Laboratory)
NCIt NCI Thesaurus (National Cancer Institute)
HGNC Human Gene Nomenclature (European Bioinformatics Institute)

Release Notes #1
Release Notes #2

@Christian_Reich will be able to provide more background soon.