The default set of covariates used to construct propensity scores does not contain verbatim measurement values. Instead, two types of binary covariates are constructed for measurements:
Was the measurement observed during the lookback window? (1 binary variable per measurement concept ID)
Was a measurement value observed below, within, or above the normal range during the lookback window? (3 binary variables per measurement concept ID)
In both cases missingness doesn’t really apply: either the measurement was observed (within a range), or it was not.
I think smoking status is an observation, not a measurement?
Thank you for the quick reply! Thanks for the clear explanation Sorry you are totally right smoking is an observation - newbie error! Is there be a way to include observations such as smoking status like you described for measurements? If this info is in the book or any of the vignettes let me know in case i missed it!