Mapping Drug code

Vocabulary Users
1

Hello,

I have a simple but serious problem using Usagi.

I’m trying to map Drug local code to Rxnorm, Rxnorm Extension, and CVS. I downloaded those standard codes and built indexs in the Usagi.

But I can not select the “Drug” domain from “Filter by domain” Filters.

I executed the Usagi without setting the “Filter by domain” and the mapping result was incorrect.

I would like to know why this happened and how to solve that problem.

Thank you in advance.

2

Could you please share examples of drug concepts you are trying to map?

Depending on quantity of codes and desired mapping precision level, it may be preferable to use Build_RxE route to map drugs using attribute-based aapproach.

3

Hello, Youngmi!
If you want to learn more about Usagi, you can watch this video. Maybe, it will help you with your problem

4

Good find, @Varvara_Savitskaya!

Dear Youngmi @maryhan01 ,
what kind of drug codes are you trying to map? Is this about vaccines?
I am no Usagi expert, but maybe you have been too strict when selecting vocabularies for Usagi to use? Did you deselect all other Vocabularies and download / used only RxNorm, RxNorm Extension and CVX (as there is no CVS vocabulary)? Maybe Usagi feels a little bit in the dark without some of the default vocabularies.
As @Eduard_Korchmar has already mentioned, Usagi sometimes has a hard time in automatic drug mapping, but it is worth a try of course.
Let us know if you want to have someone looking over your shoulder for your next try.
Cheers - Mik

5

Hello @Varvara_Savitskaya

Thank you so much!!

I’m sorry for my delayed reply.

Now, I am running Usagi again.

Thanks again for your novel information.

6

Hello,

I am running the Usagi1.4.3.

I have met the same situation as previously I mentioned

image
image1574×902 626 KB

The following figure was taken from my monitor.
I built the indexes for Drugs that were downloaded from Athena. The vocabularies are RxNorm, RxNorm Extension, and CVX.

The sample drug data:
|no|local_code1|local_name1|edi_code|ATC code|

|1|ZOVIR-I|ZOVIRAX 250MG|642503100|J05AB01|
|2|PENBRX-I|PENBREX VIAL 500 MG|642401621|J01CA01|
|3|FRAXIPA|FRAXIPARINE 2850IU.AXA |650001590|B01AB06|
|4|GEMTA2|GEMTABIN VIAL 2 G|644303580|L01BC05|
|5|GEMTA2-I|GEMTABIN VIAL 2 G|644303581|L01BC05|

Rebuilding the indexes has no problem, but while importing the source codes has the problem. I can not choose “Drug” domain in the “Filter by domain:”

I met a very similar situation few months ago, I tried to map the “Measurement” domain, and at that time I could not select the “Measurement” domain in the “Filter by domain:,” even though I built the index for Measurement domain.
At that time, I deleted the Usagi1.3.0.jar file, download Usagi1.3.0 file again, and run it again, then I had solved the problem for “Measurement.”

I would like to know why this problem happened and how to solve it.

Thanks

Youngmi

7

Dear @maryhan01 (Youngmi),

This Usagi behavior is quite unexpected. I think it would be good to look over your shoulder in a screen sharing session and figure out what is going wrong. Feel free to send a personal message to me, so that we can find a timeslot.
Cheer - Mik

8

Has this been resolved?