Installing Eunomia problem

sshahraz · April 13, 2022, 2:34am

Hello,

I am new to OHDSI and am trying to do the exercises in the Book of OHDSI. I tried several ways to install Eunomia package and all failed. I am not confident if I am writing in the right place to ask for help. But, appreciate any assistance.

Thanks

Saeid

Chris_Knoll · April 13, 2022, 6:26pm

This is a good place to post. Did you want to post the command you are trying to execute and the error you are getting?

katy-sadowski · June 30, 2022, 9:20pm

I think that this is the issue - CRAN - Package Eunomia - package was removed from CRAN.

I just ran into this issue when trying to automate unit tests for the DQD - GitHub Actions is unable to install the Eunomia package used in one of the DQD tests.

Please let us know if there’s an alternate install method suggested, or if a fix to the CRAN package is in the works thanks!

schuemie · July 1, 2022, 10:56am

For now, please install Eunomia using

install.packages("remotes")
remotes::install_github("ohdsi/Eunomia")

@frank: any update on your efforts to get Eunomia back into CRAN?

katy-sadowski · July 1, 2022, 4:26pm

This worked, thanks!

ragha123 · March 6, 2024, 2:00am

Good Day.

install.packages(“remotes”)
remotes::install_github(“ohdsi/Eunomia”)

above code worked for me when

install.packages(“Eunomia”)

mentioned in step 2 from

github.com

OHDSI/Eunomia/blob/main/README.md

Eunomia
=======

[![Build Status](https://travis-ci.org/OHDSI/Eunomia.svg?branch=main)](https://travis-ci.org/OHDSI/Eunomia)
[![codecov.io](https://codecov.io/github/OHDSI/Eunomia/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Eunomia?branch=main)
[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/Eunomia)](https://cran.r-project.org/package=Eunomia)
[![CRAN_Status_Badge](http://cranlogs.r-pkg.org/badges/Eunomia)](https://cran.r-project.org/package=Eunomia)

Eunomia is part of [HADES](https://ohdsi.github.io/Hades/).

Introduction
============
Eunomia is a standard dataset in the OMOP (Observational Medical Outcomes Partnership) Common Data Model (CDM) for testing and demonstration purposes. Eunomia is used for many of the exercises in [the Book of OHDSI](https://ohdsi.github.io/TheBookOfOhdsi/). For functions that require schema name, use 'main'.

Features
========
- Provides a small simulated dataset in the CDM.
- Also includes a subset of the Standardized Vocabularies.
- Interfaces with the DatabaseConnector and SqlRender packages.
- No need to set up a database server. Eunomia runs in your R instance (using SQLite).

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gave error.

Can you please update this solution / workaround if possble? Many Thanks.

Pepe · March 14, 2024, 11:23am

I suggest you go with broadsea-atlasdb docker container, which contains a PostgreSQL database with the EUNOMIA data already set up.

Chris_Knoll · March 14, 2024, 1:51pm

For future reference, it is helpful if you include the error message you received. Saying ‘gave error’ is not enough information to provide a solution or workaround.