"Import Concept Set From repository... " Doesn't work in cohort definition

Developers
1

Hello,

I’m running a local OHDSI Stack from Broadsea repository.

I created a new data sources with my OMOP tables and it seems to work properly.

But I have a problem when I try to create a cohort in atlas. When I import a concept set in my cohort definition tab this import is not performed properly, and it seems to get in into a loop that never ends.

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Can someone help me to find what to do ?

Thanks

1 Like
2

Open your console with ctrl-shift-i. Hopefully you will see an error. Possibly, it is trying to resolve the concepts using the registered vocabulary, but the vocabulary source isn’t specified so you might see smething like a URL being requested with undefined in it.

3

@Chris_Knoll thank you for the reply!

Yes, now I saw the error: it seems that the concept that I’m trying to import doen’t exist in the vocabulary. So I belive this application in looking for the concept in other vocabulary, and not in the new vocabulary that I upload in the new data source.

That is the massage in the console:

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4

I’ve solved the problem with an update in the source_daimon table for OHDSI Eunomia Demo Database vocab reference.

I just run this in my postgres:

UPDATE webapi.source_daimon
SET table_qualifier = <NEW_VOCAB_SCHEMA>
WHERE source_daimon_id = 2;