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I have a dataset that contains NDC, Brand Name, and Generic Name fields.
My question is how to find out whether an NDC belongs to a brand named drug or generic drug.
I checked the FDA new API, and they also provide the brand and generic names along with the queried NDC. The only thing that FDA offers to help for this matter is a pdf that contains a list of all generic drugs names but without their NDC codes, therefore, it is not useful!
Thanks.
@Ramy_Alsaffar: What @Gowtham_Rao is doing is to filter for Branded drug concepts. But if you have an NDC, just follow the mapping to the standard RxNorm, and it will tell you if it is Branded or not.
You starting line indicates that you probably don’t have OMOPed data but you want to only use OMOP Vocab to get a nice NDC-based lkup table.
You need to download the vocabulary and make sure you have it in a database and indexed. The joins in the query below can be slow if not indexed.
Consider a similar query (for ATC) that was “walking” the realtionships just like you need to do too.
select
atc.concept_id as atc_id, atc.concept_name as atc_name, atc.concept_code as atc_code, atc.concept_class_id as atc_class,
ndc.concept_id as ndc_id, ndc.concept_name as ndc_name, ndc.concept_code as ndc_code, ndc.concept_class_id as ndc_class
from concept atc
join concept_ancestor a on a.ancestor_concept_id=atc.concept_id
join concept_relationship r on r.concept_id_1=a.descendant_concept_id and r.invalid_reason is null and r.relationship_id='Mapped from'
join concept ndc on ndc.concept_id=concept_id_2 and ndc.vocabulary_id='NDC'
where atc.vocabulary_id='ATC'
Your starting point should be different. The query above starts with concept table and the ATC vocab. You may want to start with branded drugs or all ingredients.
For each join - study on what it joins.
If you struggle, ask for further help. Once finished, consider posting your final query.
You can query the RxNorm REST API to know whether a given NDC is a brand name or a generic. Specifically, you can:
The R function below returns true if the NDC is a brand name, false otherwise:
ndcBrandName <- function(ndc) { # Returns true if NDC is a brand name.
# Abbreviation reference: https://www.nlm.nih.gov/research/umls/rxnorm/docs/2018/appendix5.html
# BN Brand Name
# SBDC Semantic Branded Drug Component
# SBDF Semantic Branded Drug Form
# SBDG Semantic Branded Dose Form Group
# SBD Semantic Branded Drug
# BPCK Brand Name Pack
ndc_properties <- fromJSON(paste0('https://rxnav.nlm.nih.gov/REST/ndcproperties?id=', ndc))
rxnorm_cui <- ndc_properties[1]$ndcPropertyList[1]$ndcProperty$rxcui
tty <- fromJSON(paste0('https://rxnav.nlm.nih.gov/REST/rxcui/', rxnorm_cui, '/property?propName=TTY'))
tty[1]$propConceptGroup[1]$propConcept$propValue %in% c('BN', 'SBDC', 'SBDF', 'SBDG', 'SBD', 'BPCK')
}
It’s also possible to explore related drugs, for example find generic NDCs matching brand name NDCs – see the resouce /rxcui/{rxcui}/related?tty= values at:
https://mor.nlm.nih.gov/download/rxnav/RxNormAPIs.html#uLink=RxNorm_REST_getRelatedByType.
Regards!
Thank you very much Fabricio.
I tested the code and it works perfectly.
However, I just want to double check few points about NDC formats, the TTY types, and missing NDCs with you please.
1-
I have an 11-digit (5-4-2) NDC format dataset. Does NLM have all NDC formats in their database? or there is a limitation here?
I printed the intermediate values of your function and saw that the available NDC formats are either 9 or 10 digits. Basically, my 11-digit NDC is being converted to 10-digit NDC.
2-
I applied your function on a subset of NDCs and found that several NDCs do not exist in the NLM database. Do you know or recommend another API that I can query those missing NDCs?
3-
In your code, you are assuming if a drug is not brand named then it is a generic.
But I checked the TTY page, and there are few TTYs that do not specify the drug category whether it is a generic or brand named like: (SCD, SCDC, SCDF, PIN, MIN, PSN…)
Could you please give me some explanation about these other TTYs.
Appreciate your help.
Hello Ramy,
As per the documentation at https://rxnav.nlm.nih.gov/RxNormAPIs.html#uLink=RxNorm_REST_getNDCProperties, the /ndcproperties resource accepts NDCs in most of its myriad formats.
RxNorm is the only free resource I know (commercial databases might also have this data). From an analysis I did (see https://github.com/fabkury/ndc_map/blob/master/ddcs%20-%20AMIA%202017%20Poster.pdf), 15-22% of the NDCs found in Medicare and all-payer databases are not recognized by RxNorm, but the unrecognized NDCs might represent as little as 2.4% of the total prescriptions (which is the case of Medicare data).
RxNorm CUIs can represent different things, from an individual generic active ingredient to a particular drug product on the market; but NDCs represent labeler + active ingredients + packaging, so, from the perspective of telling brand-names apart from generics, you shouldn’t find RxNorm CUIs with “ambiguous” TTYs when querying /ndcproperties.
Kind regards,
Fabrício
Thanks for your reply.
I tried to register an account to download the dataset filtered by @Gowtham_Rao, but I am getting an error msg to contact system administration. I sent an email to "support@odysseusinc.com" about this problem but didn’t receive a reply yet.
Please advise.
@Ramy_Alsaffar - some of our engineering team members are still coming back from holidays - please allow a couple of days to investigate and respond to the issue you are facing. Apologies for the inconvenience that this is causing
Dear Fabrício Kury
I hope I am not giving you a headache, but I have few more question for you please.
Regarding the problem of identifying Brand VS Generics, I followed your algorithm and it helped me identify a good percentage of the NDC codes I have.
However, by coincidence, I found few hundreds NDC codes that are associated with ANDA but are identified as brand-named drug by using TTY.
My understanding is that NDA codes belong to brand-named drugs while ANDA codes belong to generic drugs.
Is there a scenario where a drug associated with an ANDA is considered as brand-named instead of a generic drug? Or this is simply a mistake?
My second question is related to mapping NDC codes to NDA codes. I started a new topic, please follow this link if you want to join solving this problem:
And my third question is related to Authorized Generics, please follow this link:
Also, if I want to contact NLM directly about their data, do you recommend someone that can reply to my questions officially?
Thank you very much for your help.
What would be the easiest way to determine brand vs. generic for thousands of different NDC codes?
Hi! There are no simple answer to this question. The structure of NDC codes does not contain “brand or generic” fields. But there are “Market category” field, decoding of values you can find here : https://www.fda.gov/drugs/data-standards-manual-monographs/data-standards-manual-monograph-marketing-category
There is not a 100% coincidence, but may help you, I hope.
@Kyle_Pestano: What @Mike_Nerovnya said. But there is a cheapo way of doing it: Take the mapping to RxNorm, and it will tell you whether the mapping landed on a Branded or a Clinical (not branded) drug.