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HADES development announcements

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#22

CohortMethod 4.1.0 has been released. Together with the new DatabaseConnector this provides improved handling of 64-bit integers (BIGINT) in the CDM.

#23

SelfControlledCaseSeries 3.0.0 has been released. The most important changes are:

  • Adding the self-controlled risk interval (SCRI) design variant.
  • Similarly to CohortMethod 4.1.0, together with the new DatabaseConnector this provides improved handling of 64-bit integers (BIGINT) in the CDM.
  • Several bugfixes.
1 Like
#24

ROhdsiWebApi 1.2.0 has been released. This new version supports calls to WebAPI’s that have security enabled. There are now also several vignettes explaining how to use the package (which can be found on the package website).

This release was led by @Gowtham_Rao, @Adam_Black, and @jpegilbert.

3 Likes
#25

SelfControlledCohort 1.5.1 has been released

  • Added computeTarDistribution flag to runSelfControlledCohort , which computes the distribution of exposure time windows for subjects experiencing the outcome and average absolute time between exposure and outcome.
  • Added vignette for usage with some examples
  • Bug fixes that allow support for DatabaseConnector 4.0.0+ on osx and linux
1 Like
#26

CirceR 1.0.0 has been released. This is a new package that is part of HADES, which provides the following functions:

  • Construct cohort SQL queries that conform to the OMOP CDM 5.0
  • Render a cohort expression as Markdown (print friendly)

Documentation can be found here.

1 Like
#27

DatabaseConnector 4.0.2 has been released. This release has some minor bugfixes.

(In case you’re wondering: version 4.0.1 was never released, but was used internally in EUMAEUS for a while)

#28

FeatureExtraction 3.1.1 has been released. This release contains a number of bug fixes as described in the release notes.

#29

Hydra 0.2.0 has been released. This contains an update to the prediction package skeletons.

#30

PatientLevelPrediction 4.3.7 has been released. This release contains an update to the shiny app, added recalibration options when applying a model and fixed some minor bugs. See the package news for more details.

#31

CirceR 1.1.0 has been released. This release allows users to pass raw JSON as a text string to buildCohortQuery().

#32

CirceR 1.1.1 has been released. This release updates the dependency on Circe to v1.6.4 to incorporate bugfixes.

#33

Andromeda 0.4.1 has been released. This is a patch release that fixes a failing test on CRAN’s test servers. This release also officially changes the maintainer to Adam Black.

#34

Cyclops 3.1.2 has been released. This is a patch release to improve adaptive log-likelihood profiling and handle minor changes to the survival package API.

#35

PatientLevelPrediction 4.3.10 has been released. This includes minor bug fixes for when there is only a single covariate and improved the Andromeda data processing speed when data are large (indexes are now used).

#36

CohortMethod 4.2.0 has been released. This release offers new options when using IPTW, including trimming by weights and truncating weights. Now also uses the new adaptive log-likelihood profiling of Cyclops.

#37

Andromeda 0.5.0 has been released. Andromeda now support dates and datetimes natively. A bug that prevented large andromeda objects from being loaded was also fixed.

4 Likes
#38

ParallelLogger 2.0.2 has been released. The most important change is that ParallelLogger no longer interferes with R Check, which was causing unit tests to pass when the code was generating errors.

#39

SelfControlledCaseSeries 3.1.0 has been released. Most important changes are improved power calculations and computing of likelihood profiles.

2 Likes
#40

BigKnn 1.0.1 has been released. The most important change is the addition of unit tests by @jreps .

#41

Cohort Diagnostics 2.1.1 was released yesterday. This is a hotfix release that fixed a few minor issues identified in shiny app Diagnostics Explorer. Changes have also been made to handle situations where cdm_source table has more than one row of data.

1 Like
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