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HADES development announcements

PheValuator 2.2.6 has been released. It creates an export folder with a set of results from the analysis as well as diagnostics for the run. This csv files may be used in shiny applications.

BrokenAdaptiveRidge v1.0.0 has been released and is now part of HADES. This package enables approximate L0 (best subset) regression at scale using Cyclops.

Cyclops v3.3.1 has been released and is now on CRAN. Features the introduction of Jeffreys prior and several fixes for likelihood profiling.

CohortMethod 5.0.0 has been released. This a major update with many changes, including a major overhaul of the framework for running multiple analyses. There are no guarantees for backwards compatibility, so please read the changelog carefully. This version should provide greater flexibility and stability than before.

DeepPatientLevelPrediction 1.1.3 has been released. This was a minor fix for the CI. Our main dependancy, torch in R, wasn’t installing correctly since a new release of it was released on CRAN.

DeepPatientLevelPrediction 1.1.4 has been released. This was a small change needed for running the package with Strategus. Now the device to develop the models on (GPU or CPU) can be controlled with an environment variable in the study package. Before it was hard coded in the study package. But users might want to select a certain GPU to use or even CPU for testing the package.

DeepPatientLevelPrediction 1.1.5 has been released. This is a bug fix for the feature introduced in 1.1.4. Things are moving a bit fast now in preparation for our first network study using the package with Strategus.

PheValuator 2.2.7 has been released. It allows for previously created models to be used in evaluations. It also fixes a bug in getPopnPrev.sql for sql server.

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DataQualityDashboard 2.2.0 has been released. This release adds the option to specify a cohortTableName when executing data quality checks on a cohort. It also contains several bug fixes which are detailed in the linked NEWS.md file.

SqlRender 1.15.0 has been released. Most important change is a minor change to the DESCRIPTION file that was required by CRAN.

EvidenceSynthesis 0.5.0 has been released. This release adds the functionality to perform Bayesian bias correction in causal estimation and sequential analysis using negative control outcomes. A new vignette showcasing the new functionality has been added too.

DatabaseConnector 6.2.1 has been released. Most important change is a minor change to the DESCRIPTION file that was required by CRAN.

PheValuator 2.2.8 has been released. It allows for the use of a custom visit_occurrence table for systems with extremely large visit_occurrence tables and limited processing capability.

Capr 2.0.3 has been released. Patch changes in this version include:

  • addition of an opAttribute super Class (nice job @mvankessel!)
  • add version of purrr (v1.0.1) for list_flatten bug (thanks @Sulev_Reisberg)
  • update github workflow versions

Achilles 1.7.2 has been released. With this release Achilles is now available on CRAN and has been brought in line with HADES package standards.

DataQualityDashboard 2.3.0 has been released. This release contains 2 new features:

  • New sqlOnly option that generates SQL queries which will insert DQ check results into a database table, and which can union check SQLs for improved performance
    • Shout out and many thanks to @Thomas_White for contributing this feature and @MaximMoinat for helping with review, testing, and documentation!
  • Function to convert the keys in a DQD results JSON file between snakecase and camelcase, addressing compatibility issues caused by the camelcase migration in v2.1.0

Capr 2.0.4 has been released. Hot fix to allow procedure occurrence queries to work properly.

DeepPatientLevelPrediction 1.1.6 has been released.
This includes a new feature to store hyperparameter results for long running models so the run can be resumed if it stops for any reason.

DatabaseConnector 6.2.2 has been released. Most important changes are improved overall performance for RedShift specifically, and improved performance for all platforms when downloading dates and datetimes.

ParallelLogger 3.2.0 has been released. The one change is that it should now behave much better inside try...catch blocks.