Hi there, I’m looking for some general guidance on where to get started.
I have a data set, that contains EHR text from patients clinical notes, which has:
- Gone through named entity (term) recognition
- Terms have been associated with a concept in OMOP vocabulary
- Term modifiers (such as certainty, timing, etc) have been identified for each entity
- stored all this data in the
Now, I would like to use this data to derive entries into the standard clinical tables, such as
My questions are:
- How might I get started? Has the OMOP community developed methodologies to derive clinical tables from entities?
- Is there any literature or tutorials you can point me to, in order to become familiar with the field (if such a field exists)
- Are there any terms that I should be googling? Am I using the correct terms above?