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EHR data to OMOP CDM Work Group

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(Melanie Philofsky) #42

EHR WG meeting is tomorrow, Friday, January 25th at 10am EST. Don Torok will lead the discussion on the different approaches of ETLing from source EHR to the CDM.

Zoom meeting details:

Join from PC, Mac, Linux, iOS or Android: https://ucdenver.zoom.us/j/4984831362

Or iPhone one-tap :
US: +16468769923,4984831362# or +16699006833,4984831362#
Or Telephone:
Dial(for higher quality, dial a number based on your current location):
US: +1 646 876 9923 or +1 669 900 6833
Meeting ID: 498 483 1362
International numbers available: https://zoom.us/u/9hXjQ


(Melanie Philofsky) #43

Friends:

Our meeting is cancelled this week. Our next meeting is Feb. 22nd at 10am.

Please get in touch with me if you want to present a topic or lead a discussion!


(Melanie Philofsky) #44

Our next EHR WG meeting is Friday, February 22nd at 10am EST. Sam Martin and Roger Carlson will “share some of our effort to better document and measure our OMOP ETL and general validation work…Our goal is to receive general feedback before we offer this for internal implementation at other sites and possible incorporation via OHDSI.”

Zoom meeting details:

Join from PC, Mac, Linux, iOS or Android: https://ucdenver.zoom.us/j/4984831362

Or iPhone one-tap :
US: +16468769923,4984831362# or +16699006833,4984831362#
Or Telephone:
Dial(for higher quality, dial a number based on your current location):
US: +1 646 876 9923 or +1 669 900 6833
Meeting ID: 498 483 1362
International numbers available: https://zoom.us/u/9hXjQ


(Melanie Philofsky) #45

EHR WG friends,

I am cancelling tomorrow’s call since we do not have an agenda item. If you would like to present or discuss a topic, please send me an email or reply to this forum post. Our next meeting is Friday, April 5th.


(David Blatt) #46

@MPhilofsky can you send me the invite when you have a moment.

djb2188@cumc.columbia.edu

All the best,

David Blatt


(Melanie Philofsky) #47

Hi all!

At our last EHR WG meeting we discussed the format and timing for our meetings. The group decided to continue to meet every other Friday. If we don’t have a topic or presentation scheduled, we will still meet that hour and leave the agenda open. Some suggested topics: incremental ETLs, customizing the CDM (blasphemy), ETL mapping, vocabulary mapping, Usagi… Please reply to this thread with any other thoughts or ideas.

Our next meeting is Friday, April 19th at 10am EST. We will discuss “To customize or not”, a discussion on customizing the CDM for internal use cases, the problems it solves and the issues it creates


(Selva Muthu Kumaran Sathappan) #48

Please add me (selvasathappan36@gmail.com) and Singapore Standard Time


(Melanie Philofsky) #49

I have confirmed the presenter for our next EHR WG meeting on May 3rd at 10am EST. @anoop.yamsani from University of Colorado will present “incremental loads & full refreshes from source to OMOP CDM”. I will send an updated meeting invite/reminder the last week of April/first week of May.


(Sarath Manikonda) #50

Can you please add me (naidumsb@gmail.com), in US Central time.


(Avnish Katoch) #51

Could you please add me avnish@psu.edu /EST time.


(Melanie Philofsky) #52

Hi All,

I am attaching the slides & pathology mappings from @mgurley’s presentation on Friday, May 17th.

omop_surgery_pathology_northwestern_mgurley_05_17_2019.pdf (908.8 KB)

EHR_WG_5-17_prefix_group_TO_snomed.xlsx (11.3 KB)


(Melanie Philofsky) #53

Hello EHR WG friends :slight_smile:

In tomorrow’s meeting we will discuss the recent Themis Hack-a-thon, @aostropolets’s study, and my proposal to add an additional column to the Device Exposure table. I do not think these 3 topics will take the full hour. Therefore, If we have additional time, I will open the conversation for any other topics.


(Selva Muthu Kumaran Sathappan) #54

Hello!

How do I participate in the work group meetings? I already requested my name to be added to the group but couldn’t join earlier. Apologies and can I know how I can dial in?


(Selva Muthu Kumaran Sathappan) #55

Hello,

Can you also let me know whether WG is open for people from all backgrounds and even for beginners like me? I always make sure to post my queries in forum but I also feel WG can help me learn and improve. Kindly request you to let me know

Thanks
Selva


(Maura Beaton) #56

Hi @SELVA_MUTHU_KUMARAN,

OHDSI is an open community and all working groups are open to anyone who feels they are able to contribute. A full list detailing the aims of each OHDSI working groups is available here:

And up-to-date dial-in information is available here:


(Melanie Philofsky) #57

Welcome! I just sent you the calendar invite. Our next meeting is Friday, June 14th at 10am EST


(Melanie Philofsky) #58

Hello all!

Our next EHR WG meeting is tomorrow, Friday, June 14th at 10am EST. We do not have a speaker or topic on the agenda. So, this will be an open discussion. The connection details:

Zoom meeting details:

Join from PC, Mac, Linux, iOS or Android: https://ucdenver.zoom.us/j/4984831362

Or iPhone one-tap :
US: +16468769923,4984831362# or +16699006833,4984831362#
Or Telephone:
Dial(for higher quality, dial a number based on your current location):
US: +1 646 876 9923 or +1 669 900 6833
Meeting ID: 498 483 1362
International numbers available: https://zoom.us/u/9hXjQ


(Melanie Philofsky) #59

Meeting details have changed. Please join this Zoom instead.


(Selva Muthu Kumaran Sathappan) #60

Thank you. Joining in


(Bill Hersh) #61

Hi,

I am interested in learning more about this group. I know some of you who are in the group already and look forward to meeting others.

My main interest is in moving a large extract of EHR that started from our Epic system and has been transformed into the format of our research data warehouse into a more standardized format. The purpose of putting the data into OMOP CDM is to allow more standardized methods to be developed for information retrieval tasks, such as cohort retrieval.

Is that an interest of this group? And if so, what would be the best way to get involved? I also have some summer interns this summer who can also get involved.

Bill Hersh
Oregon Health & Science University


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