In our research based on OMOP CDM patient data, we would love to have a tool to visualize patient level data. Is there any good open sourced tool provided by the community yet? Thank you!
Do we have any open sourced patient level viewer based on CDM yet?
mkwong
(Manlik Kwong)
#2
Do you mean being able to have a aggregate view of an individual patient’s timeline of visits and all the OMOP concepts associated with the patient? Observations, conditions, procedures, meds, devices, and measurements?
Rosa_Bianca_Gallo
(Rosa Bianca Gallo)
#3
Hello,
I think this would be interesting for you to read: New proposed Atlas features: Cohort Sample and Profile timeline
Best Regards,
Rosa Bianca Gallo
Sales and Marketing of Open Source Software
E. rosa@thehyve.nl
M. +31(0)611696842
T. +31(0)30 700 9713
Skype rosabiancagallo
roger.carlson
(Roger Carlson)
#4
I created an MS Access application to do that
With it, I can validate my OMOP against my EHR data in one single place.
Guannan_Gong
(Guannan Gong)
#8
Thank you, I’ve been checking the online demo http://www.ohdsi.org/web/atlas/
Could you point me under which tab I can access that? I couldn’t find it.
jposada
(Jose Posada)
#9
Hi @Guannan_Gong,
It is the profile tab. You will need the person_id number to visualize the patients. Alternatively, when you generate a simple report for a cohort, you can use the tornado view to select a sample of patients that satisfy the cohort.
