I downloaded OMOP vocabulary with version v5.0 31-AUG-23 two weeks ago and ran into the same issue with cpt4.jar. Lots of not processed cpt4 concepts.
Try running the cpt4 load program again, in the same directory. I found that on the first pass it failed to load a large number of CPT4 codes, but then running it again, the program somehow knew what codes failed to load and it updated just those coded.
Thanks, @DTorok
I have run the cpt4 few times, it looks like all the CPT 4 concepts got updated.
Jack
This issues still persist in 6/7/2024. out of the 17k Cpt4 codes around 3k gets loaded in. Vocabulary was downloaded on 6/4/2024 using version 5.
Still encountering this issue as well with the latest 20240830 vocabulary (9/9/2024). Started with ~17k CPT4 codes, then we run it multiple times, each time lowering the number of unprocessed concepts.
13576
13561
2208
1350
1325
… still going