At IKNL we are working on a python wrapper for several OHDSI tools (
FeatureExtraction, etc.). Currently I am working on the FeatureExtraction module and specifically on the
get_db_covariate_data function. This function should -when finished- return a pandas
Conversion from the R
data.frame to pandas
Dataframe is easy. However I found that the
getDbCovariateData function outputs a andromeda Table S4 class. I am no where near an R expert, but I was able to create a regular
data.frame from it by simply calling
data.frame(andromeda_obj). Is this the way? Or is there a beter way to do this?
I found how to construct an Andromeda Table here: Using Andromeda • Andromeda (ohdsi.github.io) so conversion the other way around should be simple.