Atlas Setup Failing

dramacloak · January 10, 2019, 10:20pm

Working on my initial install of the OHDSI tools and WebAPI is up and running on postgres/Windows7/Tomcat. When I run http://localhost:8080/WebAPI/source/sources, I get back:
[{“sourceId”:1,“sourceName”:“cdm”,“sourceDialect”:“postgresql”,“sourceKey”:“cdm”,“daimons”:[{“sourceDaimonId”:1,“daimonType”:“CDM”,“tableQualifier”:“cdm”,“priority”:1}]},{“sourceId”:3,“sourceName”:“results”,“sourceDialect”:“postgresql”,“sourceKey”:“results”,“daimons”:[{“sourceDaimonId”:3,“daimonType”:“Results”,“tableQualifier”:“results”,“priority”:2}]},{“sourceId”:2,“sourceName”:“vocab”,“sourceDialect”:“postgresql”,“sourceKey”:“vocab”,“daimons”:[{“sourceDaimonId”:2,“daimonType”:“Vocabulary”,“tableQualifier”:“vocab”,“priority”:0}]}]

config-local.js is set to:
define([], function () {
var configLocal = {};

configLocal.api = {
	name: 'OHDSI',
	url: 'http://localhost:8080/WebAPI'
};

return configLocal;

});

I’m running into troubles setting up Atlas (which I have setup on Tomcat to be accessible at http://localhost:8080/Atlas/). I’m getting the following errors when I try to access Atlas (from running F12 in Google Chrome):
Failed to load resource: the server responded with a status of 404 ()
BrowserDetection.js:2 Uncaught ReferenceError: bowser is not defined
at BrowserDetection.js:2
:8080/Atlas/node_modules/knockout-sortable/src/knockout-sortable.js:1 Failed to load resource: the server responded with a status of 404 ()
require.js:8 Uncaught Error: Script error for: ko.sortable
http://requirejs.org/docs/errors.html#scripterror
at C (require.js:8)
at HTMLScriptElement.onScriptError (require.js:30)
:8080/Atlas/node_modules/jquery/dist/jquery.js:1 Failed to load resource: the server responded with a status of 404 ()
require.js:8 Uncaught Error: Script error for: jquery
http://requirejs.org/docs/errors.html#scripterror
at C (require.js:8)
at HTMLScriptElement.onScriptError (require.js:30)
require.js:8 Uncaught Error: Load timeout for modules: bootstrap
http://requirejs.org/docs/errors.html#timeout
at C (require.js:8)
at D (require.js:13)
at require.js:14

dramacloak · January 10, 2019, 10:51pm

anthonysena · January 10, 2019, 11:52pm

Could you share what versions of WebAPI & Altas you are using? This will help us track down the issue. Thanks!

dramacloak · January 11, 2019, 3:06pm

I downloaded WebAPI on 12/26/2018 and Atlas on 1/10/2019. Not sure where to find the version information?

NEONKID · January 11, 2019, 3:22pm

Hello.@dramacloak

I think you got ATLAS from Github’s master branch.

ATLAS in the master branch needs to build a separate package. If this process is difficult, install the 2.6 release version below.

dramacloak · January 11, 2019, 3:41pm

Yes, problem was I pulled from the master branch. Thanks.

dramacloak · January 11, 2019, 7:33pm

I have the Atlas interface working locally now but the connection to the databases seems to be problematic as Search says no vocabularies are available, and hence I can’t create a concept set or cohort. .

Working on my initial install of the OHDSI tools and WebAPI is up and running on postgres/Windows7/Tomcat. When I run http://localhost:8080/WebAPI/source/sources, I get back:
[{“sourceId”:1,“sourceName”:“cdm”,“sourceDialect”:“postgresql”,“sourceKey”:“cdm”,“daimons”:[{“sourceDaimonId”:1,“daimonType”:“CDM”,“tableQualifier”:“cdm”,“priority”:1}]},{“sourceId”:3,“sourceName”:“results”,“sourceDialect”:“postgresql”,“sourceKey”:“results”,“daimons”:[{“sourceDaimonId”:3,“daimonType”:“Results”,“tableQualifier”:“results”,“priority”:2}]},{“sourceId”:2,“sourceName”:“vocab”,“sourceDialect”:“postgresql”,“sourceKey”:“vocab”,“daimons”:[{“sourceDaimonId”:2,“daimonType”:“Vocabulary”,“tableQualifier”:“vocab”,“priority”:0}]}]
Any ideas

anthonysena · January 11, 2019, 8:01pm

Have you downloaded the vocabulary from Athena and loaded it into your vocab schema? You seem to be missing the vocabulary version that is displayed on the Atlas configuration screen - here’s how mine looks:

There is a REST endpoint that ATLAS calls to retrieve this information from each source - I think in your case it should be:

http://localhost:8080/WebAPI/vocabulary/vocab/info

Which should produce something like:

{“version”:“v5.0 09-JUN-18”,“dialect”:“postgresql”}

dramacloak · January 11, 2019, 8:15pm

I have the vocabulary from Athena loaded into the vocab schema:

However, I just have a blank screen when I try to access
http://localhost:8080/WebAPI/vocabulary/vocab/info

anthonysena · January 11, 2019, 8:22pm

The REST endpoint I mentioned runs the following query:

select VOCABULARY_VERSION from vocab.VOCABULARY where VOCABULARY_ID = 'None';

Could you try that and post the results? Also, just to verify there are vocabularies loaded into that schema, could you run:

select COUNT(*) from vocab.VOCABULARY;

dramacloak · January 11, 2019, 8:30pm

select VOCABULARY_VERSION from vocab.VOCABULARY where VOCABULARY_ID = ‘None’;
returns: “v5.0 13-NOV-18”

select count(*) from vocab.VOCABULARY;
returns: 83

dramacloak · January 11, 2019, 8:31pm

OHDSI_app_user can run both of these queries successfully in Postgresql.

dramacloak · January 11, 2019, 8:49pm

Here are the source and source_daimon tables in postgresql, which seem potentially relevant to the current issue.
Capture5

anthonysena · January 11, 2019, 9:13pm

Could you try revising your source connection to:

jdbc:postgresql://localhost:5432/OHDSI

And then place your username and password in the corresponding fields in that table? You will need to restart WebAPI after you make those changes. Let me know if that yields any improvements.

dramacloak · January 11, 2019, 9:24pm

Unfortunately, no changes to http://localhost:8080/WebAPI/vocabulary/vocab/info or Atlas.

anthonysena · January 11, 2019, 10:29pm

Are there any errors in your Tomcat logs? If not, you could re-compile WebAPI with the following added to your settings.xml to get more granular debugging information:

<logging.level.root>debug</logging.level.root>

After that, try hitting that REST endpoint and post up the logs.

Your setup looks correct so I’m unsure why that REST endpoint does not return.

Chris_Knoll · January 12, 2019, 12:42am

How many sources should you have in this set up? It looks like you have 3 (source_id 1,2,3). Shoudln’t there just be 1 source with 3 daimons?

dramacloak · January 14, 2019, 3:53pm

I updated sources, which now looks as follows:
[{“sourceId”:1,“sourceName”:“OHDSI”,“sourceDialect”:“postgresql”,“sourceKey”:“OHDSI”,“daimons”:[{“sourceDaimonId”:1,“daimonType”:“CDM”,“tableQualifier”:“cdm”,“priority”:1},{“sourceDaimonId”:2,“daimonType”:“Vocabulary”,“tableQualifier”:“vocab”,“priority”:0},{“sourceDaimonId”:3,“daimonType”:“Results”,“tableQualifier”:“results”,“priority”:2}]}]

Vocab version isn’t showing up still though.

Here is what shows up on the screen when I try to hit http://localhost:8080/WebAPI/vocabulary/vocab/info

{“payload”:{“cause”:null,“stackTrace”:[{“methodName”:“getInfo”,“fileName”:“VocabularyService.java”,“lineNumber”:847,“className”:“org.ohdsi.webapi.service.VocabularyService”,“nativeMethod”:false},{“methodName”:“invoke0”,“fileName”:null,“lineNumber”:-2,“className”:“sun.reflect.NativeMethodAccessorImpl”,“nativeMethod”:true},{“methodName”:“invoke”,“fileName”:null,“lineNumber”:-1,“className”:“sun.reflect.NativeMethodAccessorImpl”,“nativeMethod”:false},{“methodName”:“invoke”,“fileName”:null,“lineNumber”:-1,“className”:“sun.reflect.DelegatingMethodAccessorImpl”,“nativeMethod”:false},{“methodName”:“invoke”,“fileName”:null,“lineNumber”:-1,“className”:“java.lang.reflect.Method”,“nativeMethod”:false},{“methodName”:“invoke”,“fileName”:“ResourceMethodInvocationHandlerFactory.java”,“lineNumber”:81,“className”:“org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1”,“nativeMethod”:false},{“methodName”:“run”,“fileName”:“AbstractJavaResourceMethodDispatcher.java”,“lineNumber”:144,“className”:“org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1”,“nativeMethod”:false},{“methodName”:“invoke”,“fileName”:“AbstractJavaResourceMethodDispatcher.java”,“lineNumber”:161,“className”:“org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher”,“nativeMethod”:false},{“methodName”:“doDispatch”,“fileName”:“JavaResourceMethodDispatcherProvider.java”,“lineNumber”:205,“className”:“org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$TypeOutInvoker”,“nativeMethod”:false},{“methodName”:“dispatch”,“fileName”:“AbstractJavaResourceMethodDispatcher.java”,“lineNumber”:99,“className”:“org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher”,“nativeMethod”:false},{“methodName”:“invoke”,“fileName”:“ResourceMethodInvoker.java”,“lineNumber”:389,“className”:“org.glassfish.jersey.server.model.ResourceMethodInvoker”,“nativeMethod”:false},{“methodName”:“apply”,“fileName”:“ResourceMethodInvoker.java”,“lineNumber”:347,“className”:“org.glassfish.jersey.server.model.ResourceMethodInvoker”,“nativeMethod”:false},{“methodName”:“apply”,“fileName”:“ResourceMethodInvoker.java”,“lineNumber”:102,“className”:“org.glassfish.jersey.server.model.ResourceMethodInvoker”,“nativeMethod”:false},{“methodName”:“run”,“fileName”:“ServerRuntime.java”,“lineNumber”:326,“className”:“org.glassfish.jersey.server.ServerRuntime$2”,“nativeMethod”:false},{“methodName”:“call”,“fileName”:“Errors.java”,“lineNumber”:271,“className”:“org.glassfish.jersey.internal.Errors$1”,“nativeMethod”:false},{“methodName”:“call”,“fileName”:“Errors.java”,“lineNumber”:267,“className”:“org.glassfish.jersey.internal.Errors$1”,“nativeMethod”:false},{“methodName”:“process”,“fileName”:“Errors.java”,“lineNumber”:315,“className”:“org.glassfish.jersey.internal.Errors”,“nativeMethod”:false},{“methodName”:“process”,“fileName”:“Errors.java”,“lineNumber”:297,“className”:“org.glassfish.jersey.internal.Errors”,“nativeMethod”:false},{“methodName”:“process”,“fileName”:“Errors.java”,“lineNumber”:267,“className”:“org.glassfish.jersey.internal.Errors”,“nativeMethod”:false},{“methodName”:“runInScope”,“fileName”:“RequestScope.java”,“lineNumber”:317,“className”:“org.glassfish.jersey.process.internal.RequestScope”,“nativeMethod”:false},{“methodName”:“process”,“fileName”:“ServerRuntime.java”,“lineNumber”:305,“className”:“org.glassfish.jersey.server.ServerRuntime”,“nativeMethod”:false},{“methodName”:“handle”,“fileName”:“ApplicationHandler.java”,“lineNumber”:1154,“className”:“org.glassfish.jersey.server.ApplicationHandler”,“nativeMethod”:false},{“methodName”:“serviceImpl”,“fileName”:“WebComponent.java”,“lineNumber”:473,“className”:“org.glassfish.jersey.servlet.WebComponent”,“nativeMethod”:false},{“methodName”:“service”,“fileName”:“WebComponent.java”,“lineNumber”:427,“className”:“org.glassfish.jersey.servlet.WebComponent”,“nativeMethod”:false},{“methodName”:“service”,“fileName”:“ServletContainer.java”,“lineNumber”:388,“className”:“org.glassfish.jersey.servlet.ServletContainer”,“nativeMethod”:false},{“methodName”:“service”,“fileName”:“ServletContainer.java”,“lineNumber”:341,“className”:“org.glassfish.jersey.servlet.ServletContainer”,“nativeMethod”:false},{“methodName”:“service”,“fileName”:“ServletContainer.java”,“lineNumber”:228,“className”:“org.glassfish.jersey.servlet.ServletContainer”,“nativeMethod”:false},{“methodName”:“internalDoFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:231,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:166,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“WsFilter.java”,“lineNumber”:53,“className”:“org.apache.tomcat.websocket.server.WsFilter”,“nativeMethod”:false},{“methodName”:“internalDoFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:193,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:166,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“ProxiedFilterChain.java”,“lineNumber”:61,“className”:“org.apache.shiro.web.servlet.ProxiedFilterChain”,“nativeMethod”:false},{“methodName”:“executeChain”,“fileName”:“AdviceFilter.java”,“lineNumber”:108,“className”:“org.apache.shiro.web.servlet.AdviceFilter”,“nativeMethod”:false},{“methodName”:“doFilterInternal”,“fileName”:“AdviceFilter.java”,“lineNumber”:137,“className”:“org.apache.shiro.web.servlet.AdviceFilter”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“OncePerRequestFilter.java”,“lineNumber”:125,“className”:“org.apache.shiro.web.servlet.OncePerRequestFilter”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“ProxiedFilterChain.java”,“lineNumber”:66,“className”:“org.apache.shiro.web.servlet.ProxiedFilterChain”,“nativeMethod”:false},{“methodName”:“executeChain”,“fileName”:“AbstractShiroFilter.java”,“lineNumber”:449,“className”:“org.apache.shiro.web.servlet.AbstractShiroFilter”,“nativeMethod”:false},{“methodName”:“call”,“fileName”:“AbstractShiroFilter.java”,“lineNumber”:365,“className”:“org.apache.shiro.web.servlet.AbstractShiroFilter$1”,“nativeMethod”:false},{“methodName”:“doCall”,“fileName”:“SubjectCallable.java”,“lineNumber”:90,“className”:“org.apache.shiro.subject.support.SubjectCallable”,“nativeMethod”:false},{“methodName”:“call”,“fileName”:“SubjectCallable.java”,“lineNumber”:83,“className”:“org.apache.shiro.subject.support.SubjectCallable”,“nativeMethod”:false},{“methodName”:“execute”,“fileName”:“DelegatingSubject.java”,“lineNumber”:383,“className”:“org.apache.shiro.subject.support.DelegatingSubject”,“nativeMethod”:false},{“methodName”:“doFilterInternal”,“fileName”:“AbstractShiroFilter.java”,“lineNumber”:362,“className”:“org.apache.shiro.web.servlet.AbstractShiroFilter”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“OncePerRequestFilter.java”,“lineNumber”:125,“className”:“org.apache.shiro.web.servlet.OncePerRequestFilter”,“nativeMethod”:false},{“methodName”:“internalDoFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:193,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:166,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“executeChain”,“fileName”:“AdviceFilter.java”,“lineNumber”:108,“className”:“org.apache.shiro.web.servlet.AdviceFilter”,“nativeMethod”:false},{“methodName”:“doFilterInternal”,“fileName”:“AdviceFilter.java”,“lineNumber”:137,“className”:“org.apache.shiro.web.servlet.AdviceFilter”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“OncePerRequestFilter.java”,“lineNumber”:125,“className”:“org.apache.shiro.web.servlet.OncePerRequestFilter”,“nativeMethod”:false},{“methodName”:“internalDoFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:193,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:166,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilterInternal”,“fileName”:“RequestContextFilter.java”,“lineNumber”:99,“className”:“org.springframework.web.filter.RequestContextFilter”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“OncePerRequestFilter.java”,“lineNumber”:107,“className”:“org.springframework.web.filter.OncePerRequestFilter”,“nativeMethod”:false},{“methodName”:“internalDoFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:193,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:166,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilterInternal”,“fileName”:“HttpPutFormContentFilter.java”,“lineNumber”:105,“className”:“org.springframework.web.filter.HttpPutFormContentFilter”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“OncePerRequestFilter.java”,“lineNumber”:107,“className”:“org.springframework.web.filter.OncePerRequestFilter”,“nativeMethod”:false},{“methodName”:“internalDoFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:193,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“ApplicationFilterChain.java”,“lineNumber”:166,“className”:“org.apache.catalina.core.ApplicationFilterChain”,“nativeMethod”:false},{“methodName”:“doFilterInternal”,“fileName”:“HiddenHttpMethodFilter.java”,“lineNumber”:81,“className”:“org.springframework.web.filter.HiddenHttpMethodFilter”,“nativeMethod”:false},{“methodName”:“doFilter”,“fileName”:“OncePerRequestFilter.java”,“lineNumber”:107,“className”:“org.s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imestamp”:1547480757418}}

dramacloak · January 14, 2019, 3:59pm

14-Jan-2019 09:26:39.509 INFO [Thread-9] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:26:39.566 INFO [Thread-9] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:26:39.601 INFO [Thread-9] org.apache.catalina.core.StandardService.stopInternal Stopping service [Catalina]
14-Jan-2019 09:26:39.715 WARNING [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [org.postgresql.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:26:39.715 WARNING [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [com.microsoft.sqlserver.jdbc.SQLServerDriver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:26:39.716 WARNING [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [com.amazon.redshift.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:26:39.716 WARNING [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [WebAPI] appears to have started a thread named [taskScheduler-4] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
java.net.DualStackPlainSocketImpl.connect0(Native Method)
java.net.DualStackPlainSocketImpl.socketConnect(Unknown Source)
java.net.AbstractPlainSocketImpl.doConnect(Unknown Source)
java.net.AbstractPlainSocketImpl.connectToAddress(Unknown Source)
java.net.AbstractPlainSocketImpl.connect(Unknown Source)
java.net.PlainSocketImpl.connect(Unknown Source)
java.net.SocksSocketImpl.connect(Unknown Source)
java.net.Socket.connect(Unknown Source)
sun.security.ssl.SSLSocketImpl.connect(Unknown Source)
sun.net.NetworkClient.doConnect(Unknown Source)
sun.net.www.http.HttpClient.openServer(Unknown Source)
sun.net.www.http.HttpClient.openServer(Unknown Source)
sun.net.www.protocol.https.HttpsClient.(Unknown Source)
sun.net.www.protocol.https.HttpsClient.New(Unknown Source)
sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(Unknown Source)
sun.net.www.protocol.http.HttpURLConnection.plainConnect0(Unknown Source)
sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unknown Source)
sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(Unknown Source)
sun.net.www.protocol.http.HttpURLConnection.getInputStream0(Unknown Source)
sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source)
java.net.HttpURLConnection.getResponseCode(Unknown Source)
sun.net.www.protocol.https.HttpsURLConnectionImpl.getResponseCode(Unknown Source)
org.glassfish.jersey.client.internal.HttpUrlConnector._apply(HttpUrlConnector.java:399)
org.glassfish.jersey.client.internal.HttpUrlConnector.apply(HttpUrlConnector.java:285)
org.glassfish.jersey.client.ClientRuntime.invoke(ClientRuntime.java:252)
org.glassfish.jersey.client.JerseyInvocation$1.call(JerseyInvocation.java:684)
org.glassfish.jersey.client.JerseyInvocation$1.call(JerseyInvocation.java:681)
org.glassfish.jersey.internal.Errors.process(Errors.java:315)
org.glassfish.jersey.internal.Errors.process(Errors.java:297)
org.glassfish.jersey.internal.Errors.process(Errors.java:228)
org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:444)
org.glassfish.jersey.client.JerseyInvocation.invoke(JerseyInvocation.java:681)
org.glassfish.jersey.client.JerseyInvocation$Builder.method(JerseyInvocation.java:411)
org.glassfish.jersey.client.JerseyInvocation$Builder.get(JerseyInvocation.java:311)
org.ohdsi.webapi.executionengine.service.ExecutionEngineStatusServiceImpl.checkExecutionEngineStatus(ExecutionEngineStatusServiceImpl.java:50)
sun.reflect.GeneratedMethodAccessor151.invoke(Unknown Source)
sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
java.lang.reflect.Method.invoke(Unknown Source)
org.springframework.scheduling.support.ScheduledMethodRunnable.run(ScheduledMethodRunnable.java:65)
org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.java:54)
java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
java.util.concurrent.FutureTask.runAndReset(Unknown Source)
java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source)
java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
java.lang.Thread.run(Unknown Source)
14-Jan-2019 09:26:39.717 SEVERE [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [WebAPI] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@5496ec84]) and a value of type [org.glassfish.jersey.internal.Errors] (value [org.glassfish.jersey.internal.Errors@44bcc44f]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
14-Jan-2019 09:26:39.720 SEVERE [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [WebAPI] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1ddf916e]) and a value of type [org.glassfish.jersey.process.internal.RequestScope.Instance] (value [Instance{id=f740c75f-7c71-4b9f-87de-a5d2fb4af6bf, referenceCounter=1, store size=1}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
14-Jan-2019 09:26:39.738 INFO [Thread-9] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:26:39.740 INFO [Thread-9] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:28:39.525 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name: Apache Tomcat/9.0.14
14-Jan-2019 09:28:39.527 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Dec 6 2018 21:13:53 UTC
14-Jan-2019 09:28:39.528 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 9.0.14.0
14-Jan-2019 09:28:39.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Windows 7
14-Jan-2019 09:28:39.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 6.1
14-Jan-2019 09:28:39.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
14-Jan-2019 09:28:39.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: C:\Program Files\Java\jre1.8.0_191
14-Jan-2019 09:28:39.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_191-b12
14-Jan-2019 09:28:39.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
14-Jan-2019 09:28:39.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:28:39.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:28:39.530 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:28:39.530 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:28:39.530 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=F:\Program Files\Apache Software Foundation\Tomcat 9.0\temp
14-Jan-2019 09:28:39.530 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
14-Jan-2019 09:28:39.530 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=F:\Program Files\Apache Software Foundation\Tomcat 9.0\conf\logging.properties
14-Jan-2019 09:28:39.530 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: exit
14-Jan-2019 09:28:39.530 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: abort
14-Jan-2019 09:28:39.530 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms128m
14-Jan-2019 09:28:39.530 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx256m
14-Jan-2019 09:28:39.530 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [F:\Program Files\Apache Software Foundation\Tomcat 9.0\bin;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\Rtools\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0;F:\ant\bin;C:\Program Files\Java\jdk1.8.0_191\bin;F:\PostgreSQL\pg11\bin;C:\Program Files (x86)\Integrad.3\MIV;F:\GitHub OHDSI\apache-maven-3.6.0\bin;F:\Program Files\Git\cmd;;.]
14-Jan-2019 09:28:39.622 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:28:39.686 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:28:39.688 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [424] milliseconds
14-Jan-2019 09:28:39.711 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
14-Jan-2019 09:28:39.711 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/9.0.14]
14-Jan-2019 09:28:39.745 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\WebAPI.war]
14-Jan-2019 09:28:39.755 WARNING [main] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property ‘antiJARLocking’ to ‘true’ did not find a matching property.
14-Jan-2019 09:29:06.761 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\WebAPI.war] has finished in [27,016] ms
14-Jan-2019 09:29:06.762 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\Atlas]
14-Jan-2019 09:29:06.778 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\Atlas] has finished in [16] ms
14-Jan-2019 09:29:06.778 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\docs]
14-Jan-2019 09:29:06.792 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\docs] has finished in [13] ms
14-Jan-2019 09:29:06.792 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\host-manager]
14-Jan-2019 09:29:06.814 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\host-manager] has finished in [21] ms
14-Jan-2019 09:29:06.814 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\manager]
14-Jan-2019 09:29:06.831 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\manager] has finished in [17] ms
14-Jan-2019 09:29:06.832 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\ROOT]
14-Jan-2019 09:29:06.844 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\ROOT] has finished in [11] ms
14-Jan-2019 09:29:06.846 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:29:06.854 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:29:06.857 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [27,167] milliseconds
14-Jan-2019 09:31:14.011 INFO [Thread-9] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:31:14.047 INFO [Thread-9] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:31:14.080 INFO [Thread-9] org.apache.catalina.core.StandardService.stopInternal Stopping service [Catalina]
14-Jan-2019 09:31:14.183 WARNING [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [org.postgresql.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:31:14.183 WARNING [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [com.microsoft.sqlserver.jdbc.SQLServerDriver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:31:14.183 WARNING [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [com.amazon.redshift.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:31:14.207 INFO [Thread-9] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:31:14.209 INFO [Thread-9] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:32:32.167 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name: Apache Tomcat/9.0.14
14-Jan-2019 09:32:32.170 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Dec 6 2018 21:13:53 UTC
14-Jan-2019 09:32:32.170 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 9.0.14.0
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Windows 7
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 6.1
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: C:\Program Files\Java\jre1.8.0_191
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_191-b12
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=F:\Program Files\Apache Software Foundation\Tomcat 9.0\temp
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=F:\Program Files\Apache Software Foundation\Tomcat 9.0\conf\logging.properties
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: exit
14-Jan-2019 09:32:32.172 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: abort
14-Jan-2019 09:32:32.173 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms128m
14-Jan-2019 09:32:32.173 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx256m
14-Jan-2019 09:32:32.173 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [F:\Program Files\Apache Software Foundation\Tomcat 9.0\bin;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\Rtools\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0;F:\ant\bin;C:\Program Files\Java\jdk1.8.0_191\bin;F:\PostgreSQL\pg11\bin;C:\Program Files (x86)\Integrad.3\MIV;F:\GitHub OHDSI\apache-maven-3.6.0\bin;F:\Program Files\Git\cmd;;.]
14-Jan-2019 09:32:32.271 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:32:32.344 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:32:32.347 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [428] milliseconds
14-Jan-2019 09:32:32.369 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
14-Jan-2019 09:32:32.369 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/9.0.14]
14-Jan-2019 09:32:32.405 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\WebAPI.war]
14-Jan-2019 09:32:32.415 WARNING [main] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property ‘antiJARLocking’ to ‘true’ did not find a matching property.
14-Jan-2019 09:32:58.761 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\WebAPI.war] has finished in [26,356] ms
14-Jan-2019 09:32:58.762 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\Atlas]
14-Jan-2019 09:32:58.776 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\Atlas] has finished in [13] ms
14-Jan-2019 09:32:58.776 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\docs]
14-Jan-2019 09:32:58.789 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\docs] has finished in [12] ms
14-Jan-2019 09:32:58.789 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\host-manager]
14-Jan-2019 09:32:58.809 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\host-manager] has finished in [19] ms
14-Jan-2019 09:32:58.809 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\manager]
14-Jan-2019 09:32:58.824 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\manager] has finished in [15] ms
14-Jan-2019 09:32:58.824 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\ROOT]
14-Jan-2019 09:32:58.837 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\ROOT] has finished in [13] ms
14-Jan-2019 09:32:58.840 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:32:58.847 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:32:58.851 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [26,502] milliseconds
14-Jan-2019 09:41:07.675 INFO [Thread-9] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:41:07.740 INFO [Thread-9] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:41:07.779 INFO [Thread-9] org.apache.catalina.core.StandardService.stopInternal Stopping service [Catalina]
14-Jan-2019 09:41:07.886 WARNING [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [org.postgresql.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:41:07.886 WARNING [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [com.microsoft.sqlserver.jdbc.SQLServerDriver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:41:07.886 WARNING [Thread-9] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [com.amazon.redshift.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:41:07.908 INFO [Thread-9] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:41:07.909 INFO [Thread-9] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:43:28.165 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version name: Apache Tomcat/9.0.14
14-Jan-2019 09:43:28.167 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Dec 6 2018 21:13:53 UTC
14-Jan-2019 09:43:28.167 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version number: 9.0.14.0
14-Jan-2019 09:43:28.169 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Windows 7
14-Jan-2019 09:43:28.169 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 6.1
14-Jan-2019 09:43:28.169 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
14-Jan-2019 09:43:28.169 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: C:\Program Files\Java\jre1.8.0_191
14-Jan-2019 09:43:28.169 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_191-b12
14-Jan-2019 09:43:28.169 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
14-Jan-2019 09:43:28.169 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:43:28.169 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:43:28.169 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:43:28.169 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=F:\Program Files\Apache Software Foundation\Tomcat 9.0
14-Jan-2019 09:43:28.170 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=F:\Program Files\Apache Software Foundation\Tomcat 9.0\temp
14-Jan-2019 09:43:28.170 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
14-Jan-2019 09:43:28.170 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=F:\Program Files\Apache Software Foundation\Tomcat 9.0\conf\logging.properties
14-Jan-2019 09:43:28.170 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: exit
14-Jan-2019 09:43:28.170 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: abort
14-Jan-2019 09:43:28.170 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms128m
14-Jan-2019 09:43:28.170 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx256m
14-Jan-2019 09:43:28.170 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [F:\Program Files\Apache Software Foundation\Tomcat 9.0\bin;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\Rtools\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0;F:\ant\bin;C:\Program Files\Java\jdk1.8.0_191\bin;F:\PostgreSQL\pg11\bin;C:\Program Files (x86)\Integrad.3\MIV;F:\GitHub OHDSI\apache-maven-3.6.0\bin;F:\Program Files\Git\cmd;;.]
14-Jan-2019 09:43:28.273 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:43:28.341 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:43:28.344 INFO [main] org.apache.catalina.startup.Catalina.load Server initialization in [425] milliseconds
14-Jan-2019 09:43:28.367 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
14-Jan-2019 09:43:28.367 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet engine: [Apache Tomcat/9.0.14]
14-Jan-2019 09:43:28.394 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\WebAPI.war]
14-Jan-2019 09:43:28.405 WARNING [main] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property ‘antiJARLocking’ to ‘true’ did not find a matching property.
14-Jan-2019 09:43:57.225 INFO [main] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\WebAPI.war] has finished in [28,830] ms
14-Jan-2019 09:43:57.225 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\Atlas]
14-Jan-2019 09:43:57.240 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\Atlas] has finished in [15] ms
14-Jan-2019 09:43:57.240 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\docs]
14-Jan-2019 09:43:57.261 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\docs] has finished in [20] ms
14-Jan-2019 09:43:57.261 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\host-manager]
14-Jan-2019 09:43:57.284 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\host-manager] has finished in [23] ms
14-Jan-2019 09:43:57.284 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\manager]
14-Jan-2019 09:43:57.301 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\manager] has finished in [17] ms
14-Jan-2019 09:43:57.301 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\ROOT]
14-Jan-2019 09:43:57.314 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\ROOT] has finished in [12] ms
14-Jan-2019 09:43:57.316 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler [“http-nio-8080”]
14-Jan-2019 09:43:57.324 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler [“ajp-nio-8009”]
14-Jan-2019 09:43:57.327 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in [28,981] milliseconds

dramacloak · January 14, 2019, 3:59pm

14-Jan-2019 09:44:21.998 WARNING [http-nio-8080-exec-5] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [org.postgresql.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:44:21.999 WARNING [http-nio-8080-exec-5] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [com.microsoft.sqlserver.jdbc.SQLServerDriver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:44:21.999 WARNING [http-nio-8080-exec-5] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [WebAPI] registered the JDBC driver [com.amazon.redshift.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
14-Jan-2019 09:44:23.527 INFO [http-nio-8080-exec-5] org.apache.catalina.startup.HostConfig.undeploy Undeploying context [/WebAPI]
14-Jan-2019 09:44:54.296 INFO [http-nio-8080-exec-6] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\WebAPI.war]
14-Jan-2019 09:44:54.299 WARNING [http-nio-8080-exec-6] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property ‘antiJARLocking’ to ‘true’ did not find a matching property.
14-Jan-2019 09:45:23.259 INFO [http-nio-8080-exec-6] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive [F:\Program Files\Apache Software Foundation\Tomcat 9.0\webapps\WebAPI.war] has finished in [28,962] ms