ATLAS Concept Set error -> ROLE

Minerva_Alvarez · November 17, 2023, 3:25pm

Hi there,
I have installed ATLAS and when I try to create a cohort and save it it says I can’t do it because of the role, however I have master administrator. The IT team has reinstalled WebApi and ATLAS, and the same problem persists.
The OMOP Database is Oracle and Atlas in Postgress. We have even installed an older version of ATLAS 2.10.1

Has anyone had the same error and could tell me how to fix it?

Thanks in advance,

Chris_Knoll · November 17, 2023, 9:44pm

From your error message, i don’t see where you are seeing that it’s due to a role.

If you check your webapi logs, you should be able to find an exception indicating what the error is.

Minerva_Alvarez · November 23, 2023, 12:31pm

Hi,

I have attached the logs, with the error, and screenshot of the database.

logRole.txt (33.8 KB)

Please if you have any ideas on how to fix this, we would greatly appreciate it.

Kind regards!

Minerva_Alvarez · November 30, 2023, 9:36am

Hi Chris,

We have been checking the logs, and we are not able to identify the problem.
Could you help us, please?

Chris_Knoll · November 30, 2023, 3:12pm

I don’t have an ideas, but I traced through the code and located where the exception was raised, and it has to do with something called a ‘preInsert event’.

Here’s the function that is doing it:

github.com

OHDSI/WebAPI/blob/723eb4cbe470dc58d1fa340add5c2d9cc89a4e28/src/main/java/org/ohdsi/webapi/security/listener/EntityInsertEventListener.java#L27

    
      
          private static final Logger LOG = LoggerFactory.getLogger(EntityInsertEventListener.class);
          
          
private final EntityPermissionSchemaResolver entityPermissionSchemaResolver;
          
          
public EntityInsertEventListener(EntityPermissionSchemaResolver entityPermissionSchemaResolver) {
          
          
    this.entityPermissionSchemaResolver = entityPermissionSchemaResolver;
          }
          
          
@Override
          public boolean onPreInsert(PreInsertEvent event) {
          
          
    Object entity = event.getEntity();
          
          
    if (CommonEntity.class.isAssignableFrom(entity.getClass())) {
                  CommonEntity commonEntity = (CommonEntity) entity;
                  EntityPermissionSchema permissionSchema = entityPermissionSchemaResolver.getForClass(commonEntity.getClass());
                  if (permissionSchema != null) {
                      // NOTE:
                      // Fails if executed within the same thread
                      // http://anshuiitk.blogspot.com/2010/11/hibernate-pre-database-opertaion-event.html

But the code is a little obfuscated in that it’s written to be rather generic so I’m not sure what the inputs are (I’m assuming it is a ConceptSet entity).

I will request that the Odysseus team take a look at this thread and provide thoughts.

Konstantin_Yaroshove · November 30, 2023, 3:43pm

@Minerva_Alvarez
Admin role has permissions to edit application configuration. But it does not give access to regular ATLAS features. You should grant “Atlas users” role to be able to work with analysis.

Also check your configuration of “Atlas users” role permissions. Maybe something was corrupted.

Minerva_Alvarez · November 30, 2023, 5:08pm

Thank you, I will try it