Hi community!
In my hospital we are currently implementing an OMOP repository focusing for now on patients suffering from rare diseases. For that, we are mapping everything to standard OMOP vocabularies. However, the clinicians would like to have the symptons and signs mapped to HPO and the diseases to ORPHAcodes. We have thought as a possible solution to include the codes of these two vocabularies in the column condition_source_concept_id from the condition_occurrence table and keep the condition_concept_id for standard vocabularies.
To map our values to HPOs or ORPHAcodes we were wondering if it could be possible to load these vocabularies in USAGI and take advantage of its fuzzy string matching. Has anyone tried anything similar?
Many thanks in advance!