I don’t think you should store record #1 in the Specimen table
because the data is inherent in
RE: Measurement.value_as_concept_id
I would like to petition the CDM working group to include more domain_ids allowed in Measurement.value_as_concept_id because the current convention,
Is too restrictive.
If allowed, the staphylococcus identified in the 4th record would live in the Measurement.value_as_concept_id field of record #2. Eliminating the need for a separate 4th record. AND, IMHO, this is the most logical representation of the data. The Measurement record is a blood culture test (measurement_concept_id) and the result of the test is it grew Staph (value_as_concept_id).
The current structure of the CDM would require the susceptibility record to be a separate Measurement record as you described:
This topic has been around over 5 years. Clear conventions would be helpful to make the data available for a network query.