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Thanks much for your interests in this FHIR WG. I created a WG wiki page at http://www.ohdsi.org/web/wiki/doku.php?id=projects:workgroups:fhir-wg. Could you please add your email address and affiliation in the WG members table (@Gowtham_Rao, @t_abdul_basser, @Frank, @twilson650, @cukarthik, @mitrarocca, @wanghaisheng, @jon_duke, @Richard_Starr )? I will set up a doodle poll shortly for asking your availability for the WG meetings. Thanks,
-Guoqian
As promised, I created a doodle poll for coordinating a FHIR WG Kickoff Meeting. Could you please check your availability for the time slots in the doodle poll by the end of this Friday (March 10, 2017)? (@Gowtham_Rao, @t_abdul_basser, @Frank, @twilson650, @cukarthik, @mitrarocca, @wanghaisheng, @jon_duke, @Richard_Starr)
http://doodle.com/poll/pfswq34g8t99yfup
The WebEx information will be posted soon on the WG wiki page at http://www.ohdsi.org/web/wiki/doku.php?id=projects:workgroups:fhir-wg. Feel free to let me know if you have any question.
Best regards,
-Guoqian
This is a reminder that we will have an OHDSI FHIR WG Kickoff meeting during next week. Could you please check your availability using the doodle poll below by the end of today. thanks, -Guoqian
As promised, I created a doodle poll for coordinating a
FHIR WG Kickoff Meeting. Could you please check your availability for
the time slots in the doodle poll by the end of this Friday (March 10,
2017)? (@Gowtham_Rao, @t_abdul_basser, @Frank, @twilson650, @cukarthik, @mitrarocca, @wanghaisheng, @jon_duke, @Richard_Starr)
http://doodle.com/poll/pfswq34g8t99yfup1
The WebEx information will be posted soon on the WG wiki page at http://www.ohdsi.org/web/wiki/doku.php?id=projects:workgroups:fhir-wg1. Feel free to let me know if you have any question.
Best regards,
-Guoqian
The correct doodle poll link should be available at:
http://doodle.com/poll/pfswq34g8t99yfup
Sorry for the confusion.
-Guoqian
Any chance to put some more afternoon times in it? The mornings are brutal because of European colleagues.
Ah, I thought the morning times would be good for European colleagues. Will have more afternoon times added on Monday. @Christian_Reich, Thanks, -Guoqian
Some more afternoon times are added on Wednesday and Thursday. Could you please check you availability once again? (Gowtham_Rao, @t_abdul_basser, @Frank, @twilson650, @cukarthik, @mitrarocca, @wanghaisheng, @jon_duke, @Richard_Starr, @Christian_Reich).
http://doodle.com/poll/pfswq34g8t99yfup
We will make a decision for the WG meeting time by the end of Tuesday.
Thanks,
-Guoqian
sorry for late reply .can someone create a wiki account for me
username:wanghaisheng
password:000000
Haisheng, Can you send a request to Lee Evans evans@ohdsi.org for the wiki account? @lee_evans, thanks, -Guoqian
Hi, Colleagues,
According to the Doodle poll results, the OHDSI FHIR WG Kick-off meeting is scheduled at 11:00am-12:00pm U.S. Central Daylight Time March 15, 2017. The draft agenda items include:
Please check the WebEx dial-in information at the WG wiki page as follows. (Gowtham_Rao, @t_abdul_basser, @Frank, @twilson650, @cukarthik, @mitrarocca, @wanghaisheng, @jon_duke, @Richard_Starr, @Christian_Reich)
http://www.ohdsi.org/web/wiki/doku.php?id=projects:workgroups:fhir-wg
I apologize that this time slot only covers the availability of majorities. Will post the meeting notes on the WG wiki page afterwards.
Feel free to let me know if you have any question.
Thanks,
-Guoqian
Dear Colleagues,
The OHDSI FHIR WG Monthly Meetings have been temporarily scheduled at 12:00pm-1:00pm (Central Time) in the third Wednesday each month. Those who have put their email on the FHIR WG wiki page should have received the calendar holder for the schedule. For those who would like to join the WG monthly meetings but have not put your email on the wiki page, could you do so or send email directly to me at jiang.guoqian at mayo.edu so that I can add you in the distribution list? . (@Gowtham_Rao, @t_abdul_basser, @Frank, @twilson650, @cukarthik, @mitrarocca, @wanghaisheng, @jon_duke, @Richard_Starr, @Christian_Reich)
The OHDSI FHIR WG wiki link is as follows.
http://www.ohdsi.org/web/wiki/doku.php?id=projects:workgroups:fhir-wg
Thanks,
-Guoqian
Dear Colleagues,
This is a reminder that we will have our OHDSI FHIR WG monthly meeting at 12:00pm (Central Time) in April 19, 2017. The proposed draft agenda is as follows.
Please see the WebEx Info posted on the WG wiki page.
http://www.ohdsi.org/web/wiki/doku.php?id=projects:workgroups:fhir-wg
For those who would like to join the WG monthly meetings but have not put your email on the wiki page, could you do so or send email directly to me at jiang.guoqian at mayo.edu so that I can add you in the distribution list?
Feel free to let me know if you have any questions,(@Gowtham_Rao, @t_abdul_basser, @Frank, @twilson650, @cukarthik, @mitrarocca, @wanghaisheng, @jon_duke, @Richard_Starr, @Christian_Reich)
Thanks,
-Guoqian
Dear Colleagues,
This is a gentle reminder that we will have our monthly FHIR WG meeting at 12:00pm (Central Time) on May 18, 2017. The draft agenda is as follows.
Please see the WebEx Info posted on the WG wiki page.
http://www.ohdsi.org/web/wiki/doku.php?id=projects:workgroups:fhir-wg
For those who would like to join the WG monthly meetings but have not put your email on the wiki page, could you do so or send email directly to me at jiang.guoqian at mayo.edu so that I can add you in the distribution list?
Thanks,
-Guoqian
Hi
I d’like to be part of this group. I have been working on FHIR in multiple ways, and definitively think something can be done in this field
Is it still alive?
I see the latest notes
OHDSI FHIR WG Monthly Meeting on December 20 2017
Hello,
Has any work been done on distribution of OHDSI data and research findings through FHIR based APIs? Additionally does OHDSI currently have tools that transform FHIR based EHR extracts into the CDM format?
Regards,
Vimala
Hi,
I am working on reading/writing/searching within OMOP thought a R4 FHIR API.
The method is quite different from the GT-FHIR one, since there is no staging area.
The OMOP table are extended a bit to deliver some FHIR elements that are not present.
In interested, please contact
Hi Nicolas, I am interested if you can share more details. Thanks. Damien
Hi @DamienC . Sure. Some part of the source code is available there : https://framagit.org/interchu/omop-spark/tree/master/omop-solr-sync
The rest of the source code (based on spring boot jpa and hapi fhir) will be released and the whole will be packaged together.
As said, this is FHIR R4 on top of OMOP v6 and covers patient, encounter, condition, procedure, practitioner, practitionerRole, claim, composition, documentReference, group resources.
The architecture is based on postgresql, apache spark and apache solr. This may look quite complex to use 3 layers, but they combine greatly. Yet this FHIR API is used internally for data of 12M patients, 40M discharge summaries, 20m condition, claims, procedure and 2bilion labs with sub second responses.
The next steps include the FHIR concept/valueset/conceptmap resources to deliver the concept aspects of OMOP thought the FHIR API as referenced in this this issue. We think that FHIR value-set is an abstraction compatible with OMOP and d’like to adapt a bit the concept model to store them efficiently.