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Genomic Data in the CDM


(JD Liddil) #61

So since we are dong WES, RNA, WGS how can I map these now in OMOP CDM?

(Seng Chan You) #62

@jliddil1 I’m not sure about RNA. We can store the result from WES and WGS, now, though we need to discuss a little bit more and settle the final agreement on it.

(JD Liddil) #63

So can you point me to some tutorials or info on how to store WEG and WGS?

(Christian Reich) #64


Wait a second. Scroll up. We are debating what we will have in future, and in which order. And that genomic pipelines starting from the sequences are probably not part of it in V1.

(JD Liddil) #65


(Yuan Peng) #66

Hi, I’d like also join the WG of “Genomic data in the CDM”. @Christian_Reich

(Tomohisa Sudo) #67

I would also like to join.

(Guoqian Jiang) #68

What is the status of current genomic data model in OMOP? Have we achieved consensus on it? Thanks, -Guoqian

(Christian Reich) #69

Close, @Guoqian_Jiang. It’s not easy. Please join us at the Genomic meetings. @shilparatwani will invite you.