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Error on interface /cohort-characterization/import

webapi

(Allen Lei) #1

We had launced WebAPI.war (sorry, I donot know which verion it is, maybe 2.7.1) which runing on Oracle, also we run Atlas on it. We try to import a text json in “Characterizations->Utilities->Import”, past content in the input box, click Import button, the backend popups error which tails in the bottom. Could you tell me what is wrong with it? Also I tried to invoke it by POSTMAN tool, got same error.


十一月 25, 2020 1:34:24 上午 org.glassfish.jersey.server.ServerRuntime$Responder process
严重: Error occurred when processing a response created from an already mapped exception.
2020-11-25 09:34:24.714 ERROR http-nio-8080-exec-2 org.springframework.boot.web.support.ErrorPageFilter - - Cannot forward to error page for request [/cohort-characterization/import] as the response has already been committed. As a result, the response may have the wrong status code. If your application is running on WebSphere Application Server you may be able to resolve this problem by setting com.ibm.ws.webcontainer.invokeFlushAfterService to false
javax.servlet.ServletException: org.glassfish.jersey.server.internal.process.MappableException: com.fasterxml.jackson.databind.JsonMappingException: Direct self-reference leading to cycle (through reference chain: org.springframework.messaging.support.ErrorMessage[“payload”]->org.springframework.core.convert.ConversionFailedException[“sourceType”]->org.springframework.core.convert.TypeDescriptor[“resolvableType”]->org.springframework.core.ResolvableType[“componentType”]->org.springframework.core.ResolvableType[“componentType”])
at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:489)
at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:427)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:388)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:341)
at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:228)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:292)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
at org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
at org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
at org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
at org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449)
at org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
at org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
at org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383)
at org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362)
at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
at org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.ohdsi.webapi.shiro.filters.CacheFilter.doFilter(CacheFilter.java:30)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.springframework.web.filter.RequestContextFilter.doFilterInternal(RequestContextFilter.java:99)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.springframework.web.filter.HttpPutFormContentFilter.doFilterInternal(HttpPutFormContentFilter.java:105)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.springframework.web.filter.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:81)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:197)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.springframework.boot.web.support.ErrorPageFilter.doFilter(ErrorPageFilter.java:115)
at org.springframework.boot.web.support.ErrorPageFilter.access$000(ErrorPageFilter.java:59)
at org.springframework.boot.web.support.ErrorPageFilter$1.doFilterInternal(ErrorPageFilter.java:90)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.boot.web.support.ErrorPageFilter.doFilter(ErrorPageFilter.java:108)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:212)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:106)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:141)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:79)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:616)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:88)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:528)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1099)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:670)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1520)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.run(NioEndpoint.java:1476)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.glassfish.jersey.server.internal.process.MappableException: com.fasterxml.jackson.databind.JsonMappingException: Direct self-reference leading to cycle (through reference chain: org.springframework.messaging.support.ErrorMessage[“payload”]->org.springframework.core.convert.ConversionFailedException[“sourceType”]->org.springframework.core.convert.TypeDescriptor[“resolvableType”]->org.springframework.core.ResolvableType[“componentType”]->org.springframework.core.ResolvableType[“componentType”])
at org.glassfish.jersey.server.internal.MappableExceptionWrapperInterceptor.aroundWriteTo(MappableExceptionWrapperInterceptor.java:92)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162)
at org.glassfish.jersey.message.internal.MessageBodyFactory.writeTo(MessageBodyFactory.java:1130)
at org.glassfish.jersey.server.ServerRuntime$Responder.writeResponse(ServerRuntime.java:711)
at org.glassfish.jersey.server.ServerRuntime$Responder.processResponse(ServerRuntime.java:444)
at org.glassfish.jersey.server.ServerRuntime$Responder.process(ServerRuntime.java:490)
at org.glassfish.jersey.server.ServerRuntime$2.run(ServerRuntime.java:334)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:317)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:305)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:1154)
at org.glassfish.jersey.servlet.WebComponent.serviceImpl(WebComponent.java:473)
… 70 more
Caused by: com.fasterxml.jackson.databind.JsonMappingException: Direct self-reference leading to cycle (through reference chain: org.springframework.messaging.support.ErrorMessage[“payload”]->org.springframework.core.convert.ConversionFailedException[“sourceType”]->org.springframework.core.convert.TypeDescriptor[“resolvableType”]->org.springframework.core.ResolvableType[“componentType”]->org.springframework.core.ResolvableType[“componentType”])
at com.fasterxml.jackson.databind.JsonMappingException.from(JsonMappingException.java:284)
at com.fasterxml.jackson.databind.SerializerProvider.mappingException(SerializerProvider.java:1110)
at com.fasterxml.jackson.databind.SerializerProvider.reportMappingProblem(SerializerProvider.java:1135)
at com.fasterxml.jackson.databind.ser.BeanPropertyWriter._handleSelfReference(BeanPropertyWriter.java:921)
at com.fasterxml.jackson.databind.ser.BeanPropertyWriter.serializeAsField(BeanPropertyWriter.java:698)
at com.fasterxml.jackson.databind.ser.std.BeanSerializerBase.serializeFields(BeanSerializerBase.java:690)
at com.fasterxml.jackson.databind.ser.BeanSerializer.serialize(BeanSerializer.java:155)
at com.fasterxml.jackson.databind.ser.BeanPropertyWriter.serializeAsField(BeanPropertyWriter.java:704)
at com.fasterxml.jackson.databind.ser.std.BeanSerializerBase.serializeFields(BeanSerializerBase.java:690)
at com.fasterxml.jackson.databind.ser.BeanSerializer.serialize(BeanSerializer.java:155)
at com.fasterxml.jackson.databind.ser.BeanPropertyWriter.serializeAsField(BeanPropertyWriter.java:704)
at com.fasterxml.jackson.databind.ser.std.BeanSerializerBase.serializeFields(BeanSerializerBase.java:690)
at com.fasterxml.jackson.databind.ser.BeanSerializer.serialize(BeanSerializer.java:155)
at com.fasterxml.jackson.databind.ser.BeanPropertyWriter.serializeAsField(BeanPropertyWriter.java:704)
at com.fasterxml.jackson.databind.ser.std.BeanSerializerBase.serializeFields(BeanSerializerBase.java:690)
at com.fasterxml.jackson.databind.ser.BeanSerializer.serialize(BeanSerializer.java:155)
at com.fasterxml.jackson.databind.ser.BeanPropertyWriter.serializeAsField(BeanPropertyWriter.java:704)
at com.fasterxml.jackson.databind.ser.std.BeanSerializerBase.serializeFields(BeanSerializerBase.java:690)
at com.fasterxml.jackson.databind.ser.BeanSerializer.serialize(BeanSerializer.java:155)
at com.fasterxml.jackson.databind.ser.DefaultSerializerProvider.serializeValue(DefaultSerializerProvider.java:292)
at com.fasterxml.jackson.databind.ObjectWriter$Prefetch.serialize(ObjectWriter.java:1429)
at com.fasterxml.jackson.databind.ObjectWriter.writeValue(ObjectWriter.java:951)
at com.fasterxml.jackson.jaxrs.base.ProviderBase.writeTo(ProviderBase.java:625)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.invokeWriteTo(WriterInterceptorExecutor.java:265)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor$TerminalWriterInterceptor.aroundWriteTo(WriterInterceptorExecutor.java:250)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162)
at org.glassfish.jersey.server.internal.JsonWithPaddingInterceptor.aroundWriteTo(JsonWithPaddingInterceptor.java:106)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162)
at org.glassfish.jersey.spi.ContentEncoder.aroundWriteTo(ContentEncoder.java:138)
at org.glassfish.jersey.message.internal.WriterInterceptorExecutor.proceed(WriterInterceptorExecutor.java:162)
at org.glassfish.jersey.server.internal.MappableExceptionWrapperInterceptor.aroundWriteTo(MappableExceptionWrapperInterceptor.java:86)
… 85 more


(Allen Lei) #2

Looks like WebAPI does not support Oracle DB well, same JSON content can be imported against Postgresql successfully.


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