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Condition type concept_id


#1

Hi, guys, I’m doing the mapping from EHR records to the Athena. I got two questions:

  1. should all the concept_id in the OMOP CDM will be standard?
  2. Would you please help me check the results list below?
    Thanks!
    |CONCEPT_NAME|CONCEPT_ID|
    |—|---|
    |其他诊断|32020|
    |入院诊断-文本|32818|
    |出院诊断-文本|32823|
    |病理诊断|32020|
    |院内感染|32020|
    |门诊诊断|32020|
    |出院诊断|44786627|
    |门(急)诊诊断|32020|
    |损伤和中毒的外部原因|32020|

(Alexander Davydov) #2

Only those you’re using for the population of the event_concept_id (condition, procedure, etc.) as well as type, status, ethnicity, etc. _concept_id. In other words, everything but _source_concept_id.

It looks like most of the stuff is the condition_status_concept_id and should not be resulted in the entire event.

|其他诊断|32020|
concept_id = 0 (No matching concept)

|入院诊断-文本|32818|
32890 OMOP4976960 Admission diagnosis Condition Status Standard Valid Condition Status Condition Status

|出院诊断-文本|32823|
32896 OMOP4976966 Discharge diagnosis Condition Status Standard Valid Condition Status Condition Status

|病理诊断|32020|
Not provided as the condition status in OMOP.

|院内感染|32020|
4256893 408678008 Healthcare associated infectious disease Clinical Finding Standard Valid Condition SNOMED

|门诊诊断|32020|
Shouldn’t it be a visit?
9202 OP Outpatient Visit Visit Standard Valid Visit Visit

|出院诊断|44786627|
32896 OMOP4976966 Discharge diagnosis Condition Status Standard Valid Condition Status Condition Status

|门(急)诊诊断|32020|
It’s also a visit.
9203 ER Emergency Room Visit Visit Standard Valid Visit Visit

|损伤和中毒的外部原因|32020|
Not provided as the condition status in OMOP.


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