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Atlas v1.0 Release

General
#1

Atlas v1.0 is now available on the OHDSI website ([http://www.ohdsi.org/web/atlas). This major release of Atlas brings together several OHDSI applications under a unified interface including:

  • Achilles: Explore your CDM summary statistics using the new “data sources” option via Atlas.
  • Circe: Cohort definition and generation has been incorporated into the “cohorts” option via Atlas.
  • Heracles: Cohort reporting has also been incorporated under the “reporting” tab in the cohort definition area in Atlas.
  • Hermes: Vocabulary exploration has been embedded in the “vocabulary” menu item within Atlas.

The source code for Atlas can be found on Github: https://github.com/OHDSI/Atlas/releases along with a basic setup and user guide: https://github.com/OHDSI/Atlas/wiki. Also, this latest version of Atlas leverages a new release of WebAPI also available on Github: https://github.com/OHDSI/WebAPI/releases/tag/v1.1.0.

Please post any issues or feature enhancements to the Github repository here: https://github.com/OHDSI/Atlas/issues or use the forums as a way to surface any ideas or issues.

Many thanks to all of the contributors that have helped to bring both Atlas and WebAPI to this point!

2 Likes
#2

Congratulations to all!! Does ATLAS support CDM V4, or just V5?

Thanks,
Toan

#3

Just V5.

#4

Consistent with Anthony’s wonderful news, we are pleased to announce that we have just upgraded our research community-wide deployment of Atlas here at Columbia University Medical Center/New York Presbyterian Hospital to the latest release (with some minor institution-specific customizations). The features of the latest release of Atlas are now available to our research community through our highly visible iNYP portal and is running against a 5.41M patient subset of our clinical data warehouse, as @mark_velez mentioned in his original post.

Congratulations to the entire developer community and specifically to the investigators and participants here at the OHDSI coordinating center, including @hripcsa, Sen, @aperotte, @karthik, @mark_velez, @Jungmi and @MauraBeaton.

1 Like
#5

The release of Atlas 1.0 is a huge accomplishment (though I’ll miss the other greek names…). Enormous props to @anthonysena, @Frank, @Chris_Knoll and the many many contributors who made this happen.

As Columbia has done, we should use this milestone as a chance to revisit deploying the latest OHDSI stack at every site that has a CDM. If you’ve got a CDM and need some help getting Atlas up and running, let us know. It will be well worth the effort!

@t_abdul_basser, are all researchers able to access all features of Atlas without an IRB? e.g., cohort creation, reports, etc?

#6

That’s correct, @jon_duke. @hripcsa has an IRB to allow all clinical researchers at our institution to have access to Atlas, which points to a de-identified OHDSI CDM.

#7

We will be deploying at Stanford for sure. For use by our group as well as
our Population Health Sciences center.

t