During the recent UK Biobank WG meeting we discussed the plan for implementation of UKB Survey data in the OMOP Vocabulary. The non-survey part looks less challenging so the same logic can be used in there.
Here is the detailed presentation and key points that affect the general OMOP vocabularies:
- Answers/meas values to be standardized among the vocabularies and new relationship_id ‘Has Standard answer’ to be created and used for Standardized answer lists. Also requested here.
- De-standardize and split ‘History of…’ concepts. The discussion and a whole perspective list of things to be split is here.
- New ‘History of…’ concepts enriched with time context. Discussion/proposal here.
- New Mapping table. Discussion is here. But it looks like we’re really good with additional synthetic pre-coordinated concepts.
@MaximMoinat @Christian_Reich @Vojtech_Huser @Andrew @mcantor2 @QI_omop @Dymshyts @Dave.Barman @Alexandra_Orlova @zhuk