Within the European Medical Information Framework (EMIF) project we are considering to repeat the treatment pathways study as published in PNAS in the European databases that have been or are being mapped to the OMOP CDM. We are also considering to extend this to other disease areas that are of interest within this project.
I have clearance from our IPCI database governance board to run the PNAS study and like to do some tests before getting other databases involved.
What I cannot find on the wiki is the code used to produced the output as presented in the paper, like the graphs. Where can i find these post-processing steps in the community? I think we should share the full pipeline all the way to the final reported results.
@hripcsa, @Frank, @Patrick_Ryan can you help me with this?
If any of you like to be involved in this extended treatment pathways study do please contact me. We could add other disease area's etc.
It would also be very nice to think about an online dashboard that can show these results and would allow other databases in the future to add their data on the fly (which i think should be the standard approach for all OHDSI studies!).