Hello,
I have been trying to load CPT4 for OMOP v5 and have tried it at work and at home but without success. The application loads almost all the records and then crashes. I have included the error message below. I read that this was an issue in the past with UMLS authentication but this appears to be occurring at the end of load when the processing should start. Any help would be appreciated.
Regards,
Mujeeb
Records imported: 13980javax.xml.ws.WebServiceException: java.net.SocketTimeoutException: Read timed out
at com.sun.xml.ws.transport.http.client.HttpClientTransport.readResponseCodeAndMessage(HttpClientTransport.java:210)
at com.sun.xml.ws.transport.http.client.HttpTransportPipe.createResponsePacket(HttpTransportPipe.java:237)
at com.sun.xml.ws.transport.http.client.HttpTransportPipe.process(HttpTransportPipe.java:228)
at com.sun.xml.ws.transport.http.client.HttpTransportPipe.processRequest(HttpTransportPipe.java:143)
at com.sun.xml.ws.transport.DeferredTransportPipe.processRequest(DeferredTransportPipe.java:110)
at com.sun.xml.ws.api.pipe.Fiber.__doRun(Fiber.java:961)
at com.sun.xml.ws.api.pipe.Fiber._doRun(Fiber.java:910)
at com.sun.xml.ws.api.pipe.Fiber.doRun(Fiber.java:873)
at com.sun.xml.ws.api.pipe.Fiber.runSync(Fiber.java:775)
at com.sun.xml.ws.client.Stub.process(Stub.java:429)
at com.sun.xml.ws.client.sei.SEIStub.doProcess(SEIStub.java:168)
at com.sun.xml.ws.client.sei.SyncMethodHandler.invoke(SyncMethodHandler.java:119)
at com.sun.xml.ws.client.sei.SyncMethodHandler.invoke(SyncMethodHandler.java:102)
at com.sun.xml.ws.client.sei.SEIStub.invoke(SEIStub.java:151)
at com.sun.proxy.$Proxy31.getCode(Unknown Source)
at org.odhsi.utils.cpt.Application.process(Application.java:114)
at org.odhsi.utils.cpt.Application.main(Application.java:85)
Caused by: java.net.SocketTimeoutException: Read timed out
at java.net.SocketInputStream.socketRead0(Native Method)
at java.net.SocketInputStream.socketRead(Unknown Source)
at java.net.SocketInputStream.read(Unknown Source)
at java.net.SocketInputStream.read(Unknown Source)
at sun.security.ssl.InputRecord.readFully(Unknown Source)
at sun.security.ssl.InputRecord.read(Unknown Source)
at sun.security.ssl.SSLSocketImpl.readRecord(Unknown Source)
at sun.security.ssl.SSLSocketImpl.readDataRecord(Unknown Source)
at sun.security.ssl.AppInputStream.read(Unknown Source)
at java.io.BufferedInputStream.fill(Unknown Source)
at java.io.BufferedInputStream.read1(Unknown Source)
at java.io.BufferedInputStream.read(Unknown Source)
at sun.net.www.http.HttpClient.parseHTTPHeader(Unknown Source)
at sun.net.www.http.HttpClient.parseHTTP(Unknown Source)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(Unknown Source)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source)
at java.net.HttpURLConnection.getResponseCode(Unknown Source)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getResponseCode(Unknown Source)
at com.sun.xml.ws.transport.http.client.HttpClientTransport.readResponseCodeAndMessage(HttpClientTransport.java:206)
… 16 more
Update failed. UMLS web-API crashed.