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Atlas local setup


#1

I’m new to OHDSI and was trying to get Atlas setup locally, but was a little unsure if my current setup was correct. I’ve been testing it using the synpuf1k data found here (http://www.ltscomputingllc.com/wp-content/uploads/2018/08/synpuf1k_omop_cdm_5.2.2.zip).

When the build finishes, I can see the various reports on the data sources tab, but I can’t search the vocabulary (i.e. http://www.ohdsi.org/web/atlas/#/search/acne). I wasn’t sure if the vocabulary load was a separate process, something was generally wrong with my setup, or this was just a limitation with that particular dataset (I didn’t see the files that looked to be part of the vocab ETL vocabulary.csv, concept_ancestor.csv., etc.)

I’ve put the process as I understand it into several ansible playbooks https://github.com/mkrump/atlas_dev_setup. The data load section is here https://github.com/mkrump/atlas_dev_setup/blob/master/playbooks/data/roles/load_data/tasks/main.yml. Any guidance is appreciated. Thanks!


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