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Anybody have expereince mapping pathology cases/pathology case reports from Cerner?


(Michael Gurley) #1

Does anybody have experience mapping pathology cases/pathology case reports from Cerner to the OMOP CDM? Cerner has a table that contains all the types of pathology cases. Our are as follows:

Autopsy
Body Fluid
Bone Marrow
CMH Cytogenetics
CMH FISH
Cytogenetics
Cytology
Fine Needle Aspirate
FISH
Flow Cytometry
Gyn Cytology
Hematopathology
Molecular Genetics
Outside Autopsy
Outside Cytology
Outside Hematopathology
Outside Surgical
Pathology Research
Surgical Pathology

Does anybody know of any native mappings within Cerner that normalize these types of pathology procedures to a standardized procedure vocabulary?


(Christian Reich) #2

I’d map them all to SNOMED. Should be straightforward.


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